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Sample GSM812503 Query DataSets for GSM812503
Status Public on Oct 08, 2011
Title Breed vs Thoroughbred reference 6
Sample type genomic
 
Channel 1
Source name Hungarian
Organism Equus caballus
Characteristics tissue: White Blood Cells
Extracted molecule genomic DNA
Extraction protocol genomic DNA isolated using standard PCI extraction
Label Cy5
Label protocol 4ug DNA labeled with Biorime Plus Kit (Invitrogen)
 
Channel 2
Source name Thoroughbred Reference
Organism Equus caballus
Characteristics tissue: White Blood Cells
Extracted molecule genomic DNA
Extraction protocol genomic DNA isolated using standard PCI extraction
Label Cy3
Label protocol 4ug DNA labeled with Biorime Plus Kit (Invitrogen)
 
 
Hybridization protocol Cy5 and Cy3 labeled samples combined with hyb buffers were hybridized to array, washed, and scanned
Scan protocol Scanned on an Agilent C2505C scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
Description Hungarian
Data processing Agilent Feature Extraction Software (v 10.7.1.1) was used for background subtraction and LOWESS normalization.
 
Submission date Oct 07, 2011
Last update date Oct 08, 2011
Contact name Ryan Doan
Organization name Texas A&M University
Street address 4467 TAMU
City College Station
State/province Texas
ZIP/Postal code 77843
Country USA
 
Platform ID GPL14675
Series (1)
GSE32702 Identification of copy number variants in horses

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 0.000000000e+000
2 0.000000000e+000
3 0.000000000e+000
4 -1.032975104e-001
5 3.129210821e-002
6 3.214986831e-002
7 4.680969066e-003
8 -8.577694412e-002
9 1.328624717e-001
10 -2.160528032e-002
11 -1.728188321e-002
12 -1.477993468e-002
13 3.049761943e-002
14 9.992639573e-002
15 -1.836485771e-002
16 3.396179466e-002
17 -5.152091130e-002
18 3.862118381e-002
19 -3.907683984e-002
20 8.399386385e-003

Total number of rows: 420287

Table truncated, full table size 9943 Kbytes.




Supplementary file Size Download File type/resource
GSM812503_US85003609_252731810003_S01_CGH_107_Sep09_1_2_A.txt.gz 42.9 Mb (ftp)(http) TXT
Processed data included within Sample table
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