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Platform GPL14675 Query DataSets for GPL14675
Status Public on Oct 08, 2011
Title Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Equus caballus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16027318 or 2527318.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 05, 2011
Last update date Jan 18, 2013
Contact name Ryan Doan
Organization name Texas A&M University
Street address 4467 TAMU
City College Station
State/province Texas
ZIP/Postal code 77843
Country USA
 
Samples (88) GSM812498, GSM812499, GSM812500, GSM812501, GSM812502, GSM812503 
Series (2)
GSE32702 Identification of copy number variants in horses
GSE57510 Identification of genomic loci associated with Rhodococcus equi susceptibility in foals

Data table header descriptions
ID
Probe_ID Spot identifier
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Ensembl Gene ID
CHROMOSOMAL_LOCATION Chromosomal Location
chromosome
RANGE_GB RefSeq accession.version of chromosome (equCab2 genome build)
RANGE_START Start coordinate of oligonucleotide relative to RANGE_GB
RANGE_END End coordinate of oligonucleotide relative to RANGE_GB
SEQUENCE
CONTROL_TYPE Control type
SPOT_ID

Data table
ID Probe_ID GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION chromosome RANGE_GB RANGE_START RANGE_END SEQUENCE CONTROL_TYPE SPOT_ID
1 DarkCorner pos --DarkCorner
2 DarkCorner pos --DarkCorner
3 DarkCorner pos --DarkCorner
4 ECABExon:52003 MMEL1 ENSECAG00000020732 Chr2:47251042-47251087 Chr2 NC_009145.2 47251042 47251087 CGTCTAGAGACTTGGTGATGGGGAAGTCCGAAAGCCCAGTGAGGAT FALSE Ensembl: ENSECAG00000020732
5 ECABExon:136362 MSRB3 ENSECAG00000005110 Chr6:80996830-80996888 Chr6 NC_009149.2 80996830 80996888 TGTTGTTTGTGGAACTCCATTGTTCAAGTAAGTATGTTAAGAACCTATGGTTGTGGACA FALSE Ensembl: ENSECAG00000005110
6 ECABExon:51991 ACTRT2 ENSECAG00000001137 Chr2:47037814-47037858 Chr2 NC_009145.2 47037814 47037858 GTCCTGAGGGAGTACAAGCTGCCGGACGGCAACATCATCTGCATT FALSE Ensembl: ENSECAG00000001137
7 ECABExon:79485 RSBN1L ENSECAG00000002691 Chr4:3146751-3146810 Chr4 NC_009147.2 3146751 3146810 TCTGCAGCTTTCTATGTAATGGGTATTGTTCATGGGGCAGCTACTTACTTACCTGACTTT FALSE Ensembl: ENSECAG00000002691
8 ECABExon:388159 CPT1B ENSECAG00000012793 Chr28:46022818-46022864 Chr28 NC_009171.2 46022818 46022864 GTCCATGCCATGATCATGTATCGCCGTAAACTGGACCGTGAAGAGAT FALSE Ensembl: ENSECAG00000012793
9 ECABExon:53904 ESCO2 ENSECAG00000012899 Chr2:56386545-56386604 Chr2 NC_009145.2 56386545 56386604 AACATCATTAGGTAGAAGATGTCCAAGAACTTGTCGATAATGAATTAGGCTTCCAGCAAG FALSE Ensembl: ENSECAG00000012899
10 ECABExon:51712 KCNAB2 ENSECAG00000011806 Chr2:44508072-44508116 Chr2 NC_009145.2 44508072 44508116 CTCCATTGCTGTCCGCAGTACTCGGTATGGGAGTCCCAAAAGACA FALSE Ensembl: ENSECAG00000011806
11 ECABExon:375522 SARDH ENSECAG00000007936 Chr25:35865740-35865784 Chr25 NC_009168.2 35865740 35865784 CTCCCCCTGCCCTAGGCTCGACAGTGTATACCTGCATGCTGAACC FALSE Ensembl: ENSECAG00000007936
12 ECABExon:183283 ENSECAG00000007605 Chr10:6941663-6941708 Chr10 NC_009153.2 6941663 6941708 CATGTCCCCGGGCCCTCACCTTGACTTCTCTCTGTACACTCAACTC FALSE Ensembl: ENSECAG00000007605
13 ECABExon:333659 GTPBP3 ENSECAG00000018651 Chr21:2322865-2322912 Chr21 NC_009164.2 2322865 2322912 CTGAATCAGAAAAGGCTGCTAAGCTCCCTTAACCATGGGGACTCCGTG FALSE Ensembl: ENSECAG00000018651
14 ECABExon:268921 ZNF512 ENSECAG00000014118 Chr15:68740681-68740740 Chr15 NC_009158.2 68740681 68740740 CATCGCATTCAGTGTCCTAACCAGGTGGTTCTTTCTCATTCATTTATTCAGTAAATGTTT FALSE Ensembl: ENSECAG00000014118
15 ECABExon:290991 SOHLH2 ENSECAG00000000201 Chr17:14934845-14934904 Chr17 NC_009160.2 14934845 14934904 GGCAAAAATAGACCTCTTATTAGTTGGAGACGTCACTGTTCAGTACCTGGCTGACACTGC FALSE Ensembl: ENSECAG00000000201
16 ECABExon:205533 ENSECAG00000016844 Chr11:18963894-18963953 Chr11 NC_009154.2 18963894 18963953 CATGACCTCTTAACAGAAACCAAAAGGCCAATAGATACAGCCATCTCTCAGCAAGCTTTT FALSE Ensembl: ENSECAG00000016844
17 ECABExon:258077 ZNF496 ENSECAG00000015844 Chr14:93088958-93089009 Chr14 NC_009157.2 93088958 93089009 CTGTGGTTTCAGAACCGGGTTTCTCCTTTCAAGGACATGATCTTCTGCTTCT FALSE Ensembl: ENSECAG00000015844
18 ECABExon:150938 C2CD3 ENSECAG00000012038 Chr7:69824704-69824763 Chr7 NC_009150.2 69824704 69824763 GATGCTTGTAATTCCAGTGAATGACCCTTTTGTCCTTTTCTCCCCTTTTTTTTAGGAGGA FALSE Ensembl: ENSECAG00000012038
19 ECABExon:258716 UXS1 ENSECAG00000015049 Chr15:3848991-3849036 Chr15 NC_009158.2 3848991 3849036 CCTCTGGGGCTGTTTTACGCACTGTCCTGATGCAGATAACTGGAGG FALSE Ensembl: ENSECAG00000015049
20 ECABExon:41341 KIF2C ENSECAG00000019038 Chr2:13653951-13653996 Chr2 NC_009145.2 13653951 13653996 CGCAGATCAGTCAACTCCAAAATTCCCGCTCCCAGGGAAGGTAAAT FALSE Ensembl: ENSECAG00000019038

Total number of rows: 420288

Table truncated, full table size 79162 Kbytes.




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