|
| Status |
Public on Oct 08, 2011 |
| Title |
Breed vs Thoroughbred reference 13 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Shire
|
| Organism |
Equus caballus |
| Characteristics |
tissue: White Blood Cells
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA isolated using standard PCI extraction
|
| Label |
Cy5
|
| Label protocol |
4ug DNA labeled with Biorime Plus Kit (Invitrogen)
|
| |
|
| Channel 2 |
| Source name |
Thoroughbred Reference
|
| Organism |
Equus caballus |
| Characteristics |
tissue: White Blood Cells
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA isolated using standard PCI extraction
|
| Label |
Cy3
|
| Label protocol |
4ug DNA labeled with Biorime Plus Kit (Invitrogen)
|
| |
|
| |
| Hybridization protocol |
Cy5 and Cy3 labeled samples combined with hyb buffers were hybridized to array, washed, and scanned
|
| Scan protocol |
Scanned on an Agilent C2505C scanner.
Images were quantified using Agilent Feature Extraction Software (version 10.7.1.1).
|
| Description |
Shire
|
| Data processing |
Agilent Feature Extraction Software (v 10.7.1.1) was used for background subtraction and LOWESS normalization.
|
| |
|
| Submission date |
Oct 07, 2011 |
| Last update date |
Oct 08, 2011 |
| Contact name |
Ryan Doan |
| Organization name |
Texas A&M University
|
| Street address |
4467 TAMU
|
| City |
College Station |
| State/province |
Texas |
| ZIP/Postal code |
77843 |
| Country |
USA |
| |
|
| Platform ID |
GPL14675 |
| Series (1) |
| GSE32702 |
Identification of copy number variants in horses |
|
