|
| Status |
Public on Aug 25, 2024 |
| Title |
Rhino4_D |
| Sample type |
SRA |
| |
|
| Source name |
In vivo cells
|
| Organism |
Ceratotherium simum simum |
| Characteristics |
tissue: In vivo cells
Stage: D
cell type: Granulosa Cell
genotype: WT
treatment: in vivo
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isoalted using the PicoPure RNA Isolation Kit (Thermo fisher Scientific)
Illumina TruSeq Stranded Total RNA Prep withRibo-Zero Plus
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Galaxy Web Platform
Sequence reads were trimmed for adaptor sequence/low-quality sequence using Trimmomatic
Trimmed sequence reads were mapped to CerSimCot1.0 using HISAT2
Read count extraction was performed with StringTie
Assembly: CerSimCot 1.0
Supplementary files format and content: tab-delimited text files include count values for each Sample
|
| |
|
| Submission date |
Mar 06, 2024 |
| Last update date |
Aug 26, 2024 |
| Contact name |
Elena Ruggeri |
| E-mail(s) |
eruggeri@sdzwa.org
|
| Organization name |
San Diego Zoo Wildlife Alliance
|
| Street address |
15600 San Paqual Valley Rd.
|
| City |
Escondido |
| State/province |
CA |
| ZIP/Postal code |
92027 |
| Country |
USA |
| |
|
| Platform ID |
GPL34280 |
| Series (1) |
| GSE261038 |
Granulosa cells provide transcriptomic information on ovarian follicle dynamics in southern white rhinoceros |
|
| Relations |
| BioSample |
SAMN40286850 |
| SRA |
SRX23858114 |
