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Sample GSM814529 Query DataSets for GSM814529
Status Public on Mar 01, 2012
Title IV stage 2
Sample type RNA
 
Source name IV stage 2
Organism Homo sapiens
Characteristics disease state: nasopharyngeal carcinoma
Stage: IV
Treatment protocol the Nasopharyngeal carcinoma samples and the normal sanmples were protected in the Liquid nitrogen. Laser capture microdissection was used to separate the cancer tissues from the normal tissues. Samples were first frozen-sectioned by using LEICA CM 1900 cryomicrotome. Phase contrast images were acquired using LEICA CTR 6500.
Extracted molecule total RNA
Extraction protocol the sanple were RNA was extracted with Trizol reagent
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description nasopharyngeal carcinoma of IV stage
SAMPLE16
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Oct 12, 2011
Last update date Mar 01, 2012
Contact name luo zhaohui
E-mail(s) lzhh2004639@yahoo.com.cn
Phone 0086-731-82355401
Fax 0086-731-82355401
Organization name Cancer Research Institute
Lab Key Laboratory of Carcinogenesis and Cancer Invasion of
Street address 110 Xiangya Road
City Changsha
State/province Hunan
ZIP/Postal code 410078
Country China
 
Platform ID GPL11350
Series (1)
GSE32906 Differential expressed miRNAs in Multi-stages and Lymphoid node metastasis of Nasopharyngeal Carcinoma

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 35.375 0.8052263
ILMN_3168038 87.04166 0.4133946
ILMN_3167890 12961.58 3.68E-38
ILMN_3167526 48.45833 0.7214458
ILMN_3167209 34.58333 0.80975
ILMN_3168219 126.5 0.1484597
ILMN_3167464 114.875 0.211789
ILMN_3167213 44.54167 0.7482385
ILMN_3167057 245.5417 0.000208049
ILMN_3168313 44.33333 0.7496246
ILMN_3166972 108.4167 0.2529223
ILMN_3168149 300.5 1.45E-06
ILMN_3168527 46.33333 0.7361533
ILMN_3167562 38.66667 0.7857261
ILMN_3168099 619.5417 4.17E-30
ILMN_3168017 704.625 3.68E-38
ILMN_3167545 46.45833 0.7352992
ILMN_3167951 156.9167 0.04663127
ILMN_3167172 51.75 0.6979043
ILMN_3167994 216.2917 0.001757475

Total number of rows: 1145

Table truncated, full table size 34 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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