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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 24, 2024 |
| Title |
Arabidopsis, Mock, 8 hours, rep 1 |
| Sample type |
SRA |
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| Source name |
Root
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| Organism |
Arabidopsis thaliana |
| Characteristics |
tissue: Root
genotype: 35S:XVE>>PLT5-TagRFP
treatment: DMSO
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using a GeneJET Plant RNA purification kit (ThermoFisher) following the manufacturer’s instructions
RNA-seq libraries were constructed using a TruSeq Stranded Total RNA Library prep kit (Illumina)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
RNA-seq data analysis was performed using packages available in Chipster
Assembly: TAIR 10.39
Supplementary files format and content: tab-delimited text file (tsv) includes raw counts for each sample
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| Submission date |
Apr 19, 2024 |
| Last update date |
Apr 24, 2024 |
| Contact name |
Xixi Zhang |
| E-mail(s) |
xixi.zhang@helsinki.fi
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| Phone |
0401852968
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| Organization name |
University of Helsinki
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| Street address |
Pläsinpellonkuja 4 B 50
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| City |
Helsinki |
| ZIP/Postal code |
00740 |
| Country |
Finland |
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| Platform ID |
GPL19580 |
| Series (1) |
| GSE264403 |
Identification of cambium stem cell factors and their positioning mechanism |
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| Relations |
| BioSample |
SAMN40991907 |
| SRA |
SRX24280973 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8217649_A013_PLT8D-1_ATCACG.merged-20180907.R1.tsv.gz |
505.2 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
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