 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 24, 2024 |
| Title |
Arabidopsis, Mock, 8 hours, rep 3 |
| Sample type |
SRA |
| |
|
| Source name |
Root
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
tissue: Root
genotype: 35S:XVE>>PLT5-TagRFP
treatment: DMSO
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using a GeneJET Plant RNA purification kit (ThermoFisher) following the manufacturer’s instructions
RNA-seq libraries were constructed using a TruSeq Stranded Total RNA Library prep kit (Illumina)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
RNA-seq data analysis was performed using packages available in Chipster
Assembly: TAIR 10.39
Supplementary files format and content: tab-delimited text file (tsv) includes raw counts for each sample
|
| |
|
| Submission date |
Apr 19, 2024 |
| Last update date |
Apr 24, 2024 |
| Contact name |
Xixi Zhang |
| E-mail(s) |
xixi.zhang@helsinki.fi
|
| Phone |
0401852968
|
| Organization name |
University of Helsinki
|
| Street address |
Pläsinpellonkuja 4 B 50
|
| City |
Helsinki |
| ZIP/Postal code |
00740 |
| Country |
Finland |
| |
|
| Platform ID |
GPL19580 |
| Series (1) |
| GSE264403 |
Identification of cambium stem cell factors and their positioning mechanism |
|
| Relations |
| BioSample |
SAMN40991909 |
| SRA |
SRX24280977 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8217651_A015_PLT8D-5_ACTTGA.merged-20180907.R1.tsv.gz |
505.3 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
