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Sample GSM8217661 Query DataSets for GSM8217661
Status Public on Apr 24, 2024
Title Arabidopsis, Induced, 24 hours, rep 2
Sample type SRA
 
Source name Root
Organism Arabidopsis thaliana
Characteristics tissue: Root
genotype: 35S:XVE>>PLT5-TagRFP
treatment: EST
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using a GeneJET Plant RNA purification kit (ThermoFisher) following the manufacturer’s instructions
RNA-seq libraries were constructed using a TruSeq Stranded Total RNA Library prep kit (Illumina)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing RNA-seq data analysis was performed using packages available in Chipster
Assembly: TAIR 10.39
Supplementary files format and content: tab-delimited text file (tsv) includes raw counts for each sample
 
Submission date Apr 19, 2024
Last update date Apr 24, 2024
Contact name Xixi Zhang
E-mail(s) xixi.zhang@helsinki.fi
Phone 0401852968
Organization name University of Helsinki
Street address Pläsinpellonkuja 4 B 50
City Helsinki
ZIP/Postal code 00740
Country Finland
 
Platform ID GPL19580
Series (1)
GSE264403 Identification of cambium stem cell factors and their positioning mechanism
Relations
BioSample SAMN40991917
SRA SRX24280975

Supplementary file Size Download File type/resource
GSM8217661_A023_PLT24E-4_ACTGAT.merged-20180907.R1.tsv.gz 504.6 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA

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