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Sample GSM82298 Query DataSets for GSM82298
Status Public on Apr 30, 2007
Title 1989_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11772.6504 132.1421 G 128.5105 11851.6504 5011 12298.9199 182 15.22266674 92.22324084 78.9273 79 8.8155 228 132.1421
1002 1 979.7864 10.9976 G 11.4777 1058.7864 1151 536.8389 105 11.56244564 92.24691328 79.3933 79 8.8313 184 10.9976
1003 1 4.6897 0.0526 L 0.8938 83.6897 83 10.3261 29 6.076507568 93.63143881 80.2581 79 9.7543 161 0.0526
1004 1 6.0588 0.068 L 0.9148 85.0588 86 11.5043 34 6.579524517 92.98296172 79.6319 79 9.322 150 0.068
1005 1 6.8556 0.077 L 0.9198 84.8556 83 11.3407 90 10.70474434 92.25571041 78.8596 78 9.5038 236 0.077
1006 1 21.0698 0.2365 G 1.094 100.0698 98 12.3503 43 7.39927721 91.46972136 79.1703 79 8.3131 188 0.2365
1007 1 16.9821 0.1906 G 1.0501 93.9821 94 13.9252 56 8.444016457 89.49913206 78.3132 77 8.3328 188 0.1906
1008 1 11550.9609 129.6538 G 127.6989 11628.9609 5121 12370.8018 183 15.26443005 91.06548127 78.2167 78 8.7103 124 129.6538
1009 1 461.9362 5.185 G 5.9093 539.9362 581 202.9621 94 10.94004154 91.37123662 78.2667 78 8.9142 186 5.185
1010 1 645.3617 7.2439 G 7.9748 722.3617 775 363.8477 94 10.94004154 90.58020345 77.8462 77 9.0535 188 7.2439
1011 1 272.8851 3.063 G 3.747 350.8851 353 108.9974 87 10.52482033 93.64361272 78.1667 78 10.4291 156 3.063
1012 1 37.2754 0.4184 G 1.2773 115.2754 112 18.6415 69 9.373021126 90.24575763 77.989 78 8.1638 188 0.4184
1013 1 29.6533 0.3328 G 1.1761 106.6533 101 30.8634 75 9.772049904 90.68421198 76.8352 77 9.1228 188 0.3328
1014 1 14.5 0.1628 G 1.0184 92.5 93 10.8972 44 7.484820843 90.82640549 77.8626 78 8.5509 188 0.1628
1015 1 12429.3643 139.5134 G 140.966 12505.3643 7123 12207.3311 175 14.92705345 88.71194483 75.925 76 8.4746 124 139.5134
1016 1 36.7826 0.4129 G 1.2362 115.7826 115 14.6899 69 9.373021126 93.66004156 79.3022 79 9.7734 188 0.4129
1017 1 17.5714 0.1972 G 1.0389 95.5714 97 11.9007 42 7.312732697 91.99075814 78.533 78 9.3272 188 0.1972
1018 1 8.1795 0.0918 L 0.9434 85.1795 85 12.4301 39 7.04672575 90.28970094 77.8571 77 8.8598 188 0.0918
1019 1 15.0182 0.1686 G 1.0279 94.0182 94 9.1899 55 8.368284225 91.47013495 79.1154 79 8.3134 188 0.1686
1020 1 23.0882 0.2592 G 1.1214 103.0882 101 14.7257 68 9.304853439 91.92407129 80.5337 80 7.9494 184 0.2592

Total number of rows: 54359

Table truncated, full table size 5819 Kbytes.




Supplementary file Size Download File type/resource
GSM82298.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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