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GEO accession:
Sample GSM82300
Query DataSets for GSM82300
Status
Public on Sep 28, 2010
Title
1995_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, radiotherapy alone
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, radiotherapy alone
Data processing
global median normalization
Submission date
Nov 08, 2005
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
14930.502
151.7107
G
157.9591
15011.502
10203
13778.4727
231
17.14987946
95.0341303
81.7882
81
9.3561
211
1002
1
1140.0146
11.5838
G
12.5573
1222.0146
1328
592.9246
138
13.25545406
97.31499385
83.1207
82
10.21
120
1003
1
0.0286
0.0003
L
0.8416
84.0286
83
10.9479
35
6.675580978
99.84872909
84.9006
84
10.5658
187
1004
1
1.9753
0.0201
L
0.7121
84.9753
84
10.5806
81
10.15541267
119.3297735
86.9314
83
24.2198
181
1005
1
5.382
0.0547
L
0.9177
85.382
84
10.6608
89
10.64510822
93.03925585
80.442
80
8.6928
142
1006
1
26.2073
0.2663
G
1.1257
106.2073
106
13.2561
82
10.21790791
94.34763602
80.8661
80
9.5651
116
1007
1
23.2809
0.2366
G
1.0755
104.2809
104
12.938
89
10.64510822
96.95624037
81.661
81
10.6375
122
1008
1
14818.4111
150.5718
G
154.0287
14901.4111
11821
13869.167
230
17.11271667
96.74439837
82.7306
83
9.1629
227
1009
1
188.5966
1.9164
G
2.8635
269.5966
267
68.8982
121
12.41217041
94.14942726
82.6555
81
8.7663
123
1010
1
500.2373
5.083
G
6.0539
582.2373
629
221.5413
120
12.36077404
96.17611513
83.7212
82
9.4507
108
1011
1
49.7379
0.5054
G
1.3853
129.7379
130
18.2682
105
11.56244564
93.65279576
80.292
80
9.1019
117
1012
1
35.0769
0.3564
G
1.2171
116.0769
118
17.3233
78
9.965575218
95.37539798
80.4888
81
9.5836
184
1013
1
33.3723
0.3391
G
1.2045
114.3723
112
13.9962
94
10.94004154
94.95463831
81.05
81
9.3031
124
1014
1
19.1029
0.1941
G
1.0548
100.1029
99
10.5637
68
9.304853439
94.90537281
81.3094
81
9.2702
187
1015
1
14688.8574
149.2553
G
151.4036
14772.8574
12966
13268.0273
228
17.03815269
97.57270898
84.1429
84
9.0485
218
1016
1
41.8812
0.4256
G
1.2679
124.8812
123
16.0724
103
11.45179749
98.49471309
83.8034
83
10.3298
121
1017
1
58.2549
0.5919
G
1.4427
140.2549
136
19.7572
104
11.5072546
97.21789094
82.0833
82
10.1453
124
1018
1
1.9231
0.0195
L
0.862
83.9231
82
11.1508
52
8.136857986
97.36293932
82.7412
82
10.242
87
1019
1
10.1875
0.1035
L
0.9608
91.1875
91
12.4296
64
9.027033806
94.91099299
80.7117
81
9.274
115
1020
1
21.2195
0.2156
G
1.0719
104.2195
104
14.4847
82
10.21790791
97.22900173
82.9182
83
9.486
114
Total number of rows:
54359
Table truncated, full table size
5475 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM82300.TXT.gz
2.3 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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