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Sample GSM82301 Query DataSets for GSM82301
Status Public on Mar 23, 2015
Title 1995_d_1
Sample type RNA
 
Source name biopsy, during treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13870.8213 130.9872 G 148.5679 13951.8213 8649 13491.3018 217 16.62206268 93.90870911 81.199 81 8.6058 209
1002 1 1261.4117 11.912 G 14.3771 1341.4117 1524 728.1621 138 13.25545406 93.30193225 79.6271 80 8.868 122
1003 1 4.1928 0.0396 L 0.8495 86.1928 87 10.2704 83 10.28002357 101.4644757 83.6316 82 12.9763 177
1004 1 2.2692 0.0214 L 0.8771 87.2692 87 11.8177 52 8.136857986 99.49698737 86.0094 85 9.6647 110
1005 1 11.98 0.1131 L 0.9819 93.98 96 14.157 50 7.978845596 95.7134749 81.4066 82 9.1423 188
1006 1 28.3151 0.2674 G 1.145 110.3151 111 11.4854 73 9.640875816 96.34217316 81.6404 82 9.5614 184
1007 1 28.2687 0.267 G 1.1344 112.2687 111 13.929 67 9.236181259 98.96748224 83.3462 84 9.9783 188
1008 1 14873.4902 140.4558 G 150.9445 14956.4902 12843 13653.7754 214 16.50676346 99.0859907 84.1204 83 10.724 224
1009 1 208.6435 1.9703 G 2.897 289.6435 302 78.9572 117 12.20528698 99.97979883 83.2185 81 12.6532 123
1010 1 565.7321 5.3424 G 6.8913 645.7321 730 300.8829 114 12.04779243 93.70235952 79.6917 80 9.1349 124
1011 1 51.7529 0.4887 G 1.3977 132.7529 133 17.6428 85 10.40314198 94.97815561 81.3646 81 9.3188 187
1012 1 41.2716 0.3897 G 1.2906 120.2716 119 18.0965 81 10.15541267 93.1934416 79.7582 79 9.4623 188
1013 1 28.7375 0.2714 G 1.1748 109.7375 109 17.2125 80 10.09253025 93.40942128 80.8407 81 8.2729 188
1014 1 17.4211 0.1645 G 1.028 99.4211 97 13.398 38 6.955796242 96.71771697 81.9451 82 9.8118 188
1015 1 14077.2061 132.9362 G 142.5388 14161.2061 11714 13253.2539 218 16.66031837 99.34985266 82.9825 84 10.2332 236
1016 1 52.6543 0.4972 G 1.3886 134.6543 119 63.1031 81 10.15541267 96.96966301 81.8011 82 9.9798 187
1017 1 64.3301 0.6075 G 1.5717 142.3301 144 22.4726 105 11.56244564 90.55631069 79.339 78 8.3709 122
1018 1 5.7647 0.0544 L 0.9269 84.7647 85 10.9627 34 6.579524517 91.44577955 78.2033 79 8.2972 188
1019 1 5.7586 0.0544 L 0.908 86.7586 86 11.3279 87 10.52482033 95.54904276 79.0578 81 9.6994 179
1020 1 30.1429 0.2847 G 1.181 111.1429 111 14.7807 98 11.17038345 94.11207561 80.3966 81 8.7414 120

Total number of rows: 54359

Table truncated, full table size 5482 Kbytes.




Supplementary file Size Download File type/resource
GSM82301.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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