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Sample GSM82327 Query DataSets for GSM82327
Status Public on Apr 30, 2007
Title 1687_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 19057.2539 243.5 G 185.372 19141.2539 11330 19720.3027 152 13.91159248 103.2585986 85.3417 84 12.8391 124 243.5
1002 1 1058.6526 13.5267 G 9.0587 1142.6526 1268 580.6512 95 10.9980793 126.1391112 90.4078 84 28.0927 185 13.5267
1003 1 0.3265 0.0042 L 0.6864 83.3265 82 12.2398 49 7.898653984 121.3969987 87.025 83 25.598 124 0.0042
1004 1 20.5 0.2619 L 0.9597 101.5 93 31.1082 34 6.579524517 105.7661797 83.9724 81 16.5108 149 0.2619
1005 1 2.4118 0.0308 L 0.7435 87.4118 84 17.9668 85 10.40314198 117.5706778 88.2775 85 21.7138 197 0.0308
1006 1 29.4146 0.3758 G 1.0931 110.4146 98 46.1075 41 7.225152016 101.0148311 81.8626 81 13.3432 188 0.3758
1007 1 19.6829 0.2515 G 1.01 100.6829 100 16.3565 41 7.225152016 99.6904944 83.2099 81 12.4603 187 0.2515
1008 1 19820.4844 253.252 G 178.9366 19907.4844 11231 19776.6387 155 14.04820728 111.2543924 87.4479 87 16.1696 98 253.252
1009 1 275.2658 3.5171 G 2.6589 358.2658 358 83.136 79 10.02925301 134.742802 90.9061 83 34.4952 187 3.5171
1010 1 637.7717 8.149 G 6.7836 716.7717 819 319.4091 92 10.82303238 105.6626132 83.7702 79 17.7751 167 8.149
1011 1 43.7042 0.5584 G 1.2159 124.7042 122 15.7555 71 9.507891655 102.5616366 81.7534 81 14.3744 152 0.5584
1012 1 33.5128 0.4282 L 0.9892 116.5128 113 16.2352 39 7.04672575 117.7901469 86.6703 83 23.1934 188 0.4282
1013 1 29.6897 0.3794 G 1.1397 106.6897 107 12.7404 58 8.59348011 93.61344402 77.7527 77 11.0756 188 0.3794
1014 1 8.4828 0.1084 L 0.8424 87.4828 86 11.834 29 6.076507568 103.8495211 80.8655 79 16.5663 177 0.1084
1015 1 19742.7695 252.259 G 200.1242 19824.7695 6950 21152.416 180 15.1387949 99.06234937 81.7411 82 11.3749 116 252.259
1016 1 70.7143 0.9035 G 1.5625 150.7143 134 64.1469 77 9.90148735 96.45944212 81.1635 80 10.973 108 0.9035
1017 1 10.303 0.1316 L 0.9208 90.303 90 14.4106 33 6.482044697 98.07340648 80.0965 80 12.0489 149 0.1316
1018 1 43.0556 0.5501 G 1.2649 121.0556 96 74.1324 54 8.291859627 95.70589742 78.5096 78 11.8039 163 0.5501
1019 1 5.9412 0.0759 L 0.8782 85.9412 85 14.5682 34 6.579524517 97.86006749 79.4528 80 11.9067 165 0.0759
1020 1 36.4571 0.4658 L 0.997 119.4571 111 34.0985 35 6.675580978 119.8177584 88.6571 83 24.5452 181 0.4658

Total number of rows: 54359

Table truncated, full table size 5847 Kbytes.




Supplementary file Size Download File type/resource
GSM82327.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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