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Sample GSM82344 Query DataSets for GSM82344
Status Public on Apr 30, 2007
Title 1844_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13650.3262 163.477 G 141.3467 13730.3262 4914 14662.9316 225 16.92568779 97.13934022 81.1163 80 11.4262 223 163.477
1002 1 912.7143 10.9307 G 10.5355 991.7143 1097 547.6398 121 12.41217041 94.13112468 79.3761 79 10.0874 121 10.9307
1003 1 -2.375 -0.0284 L 0.7944 82.625 79 18.3043 32 6.383076668 104.0133686 86.5114 85 12.6756 182 -0.0284
1004 1 25.1154 0.3008 G 1.0758 107.1154 104 21.6197 52 8.136857986 99.5724648 82.6429 82 11.715 188 0.3008
1005 1 9.8814 0.1183 L 0.9354 85.8814 84 13.2218 59 8.667244911 91.80869969 76.4153 76 10.5391 122 0.1183
1006 1 19.5946 0.2347 G 1.053 95.5946 95 18.1249 37 6.86366272 90.78262248 76.9176 76 9.8551 176 0.2347
1007 1 7.6102 0.0911 L 0.9147 87.6102 86 11.2807 59 8.667244911 95.78074858 80.7456 80 10.5205 118 0.0911
1008 1 13761.8994 164.8132 G 140.5858 13843.8994 5168 14725.5586 223 16.85029411 98.47298877 83.2379 82 10.982 235 164.8132
1009 1 408.7544 4.8953 G 4.9575 490.7544 537 226.1442 116 12.15301514 98.99170458 82.1327 82 11.3278 102 4.8953
1010 1 792.4039 9.4899 G 9.1699 871.4039 956 425.0039 106 11.61737442 95.02834616 79.8516 79 10.6856 188 9.4899
1011 1 92.1932 1.1041 G 1.8463 170.1932 172 32.3159 88 10.58513451 92.18063684 78.7556 78 9.4538 186 1.1041
1012 1 115.35 1.3814 G 2.0374 195.35 203 49.1712 80 10.09253025 95.88103299 79.6889 80 10.5874 186 1.3814
1013 1 42.1831 0.5052 G 1.2641 122.1831 118 18.4493 71 9.507891655 96.65856974 80.5444 80 11.1057 186 0.5052
1014 1 20.9841 0.2513 G 1.0728 97.9841 97 14.7535 63 8.956232071 91.33743295 76.8462 77 9.5583 188 0.2513
1015 1 15753.833 188.6687 G 166.6484 15833.833 8934 15628.8994 249 17.80552292 95.01340754 81.2512 80 10.0089 223 188.6687
1016 1 18.1 0.2168 G 1.0189 98.1 99 13.7321 50 7.978845596 96.27582547 80.0824 80 10.8505 176 0.2168
1017 1 13.5857 0.1627 L 0.975 93.5857 96 14.5921 70 9.44069767 95.98347584 81.3519 80 10.6556 112 0.1627
1018 1 11.9524 0.1431 L 0.9684 89.9524 88 15.1248 42 7.312732697 92.88908979 78.8212 78 9.9261 185 0.1431
1019 1 9.5323 0.1142 L 0.8986 88.5323 87 18.9436 62 8.884866714 98.52034896 80.5429 79 13.0136 109 0.1142
1020 1 38.1452 0.4568 C 1.0059 142.1452 124 52.9284 62 8.884866714 141.3170431 102.5842 104 24.878 105 0.4568

Total number of rows: 54359

Table truncated, full table size 5842 Kbytes.




Supplementary file Size Download File type/resource
GSM82344.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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