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Sample GSM82356 Query DataSets for GSM82356
Status Public on Apr 30, 2007
Title 1356_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13950.7236 155.6482 G 146.878 14030.7236 7208 14629.5645 172 14.79855442 95.52638597 79.9917 80 10.3509 124 155.6482
1002 1 1021.2621 11.3942 G 11.7029 1098.2621 1287 602.6868 105 11.56244564 93.84552343 77.7033 77 11.2303 188 11.3942
1003 1 6.3611 0.071 L 0.8959 84.3611 84 11.6002 36 6.770275116 94.16006093 78.5754 78 10.7734 185 0.071
1004 1 20.8679 0.2328 G 1.0474 99.8679 100 14.7111 53 8.214724541 95.34647052 77.7912 79 10.8976 188 0.2328
1005 1 7.4324 0.0829 L 0.9188 82.4324 84 12.0596 37 6.86366272 89.71269943 75.7831 75 9.8085 172 0.0829
1006 1 20.8113 0.2322 G 1.0597 94.8113 96 11.1762 53 8.214724541 89.46898348 74.924 74 10.3127 177 0.2322
1007 1 16.098 0.1796 L 0.9598 94.098 95 13.0192 51 8.058238983 98.03456235 79.5055 78 13.3564 188 0.1796
1008 1 13311.709 148.5187 G 141.5722 13389.709 5897 14300.6279 177 15.0121088 94.57867743 79.6 78 11.0525 124 148.5187
1009 1 378.3889 4.2217 G 5.022 454.3889 515 181.692 90 10.70474434 90.4790252 75.5989 76 9.6527 188 4.2217
1010 1 714.2556 7.9689 G 8.9362 788.2556 932 399.2331 90 10.70474434 88.20881224 74.1397 74 9.4725 185 7.9689
1011 1 95.8125 1.069 G 1.8803 171.8125 178 37.8606 80 10.09253025 91.37535718 75.5824 76 10.2502 188 1.069
1012 1 206.2532 2.3012 G 3.1744 280.2532 300 101.8403 79 10.02925301 88.28514552 74.2994 74 9.5234 183 2.3012
1013 1 54.7397 0.6107 G 1.4639 128.7397 125 21.4693 73 9.640875816 87.94499586 74.7527 74 9.2967 188 0.6107
1014 1 15.7805 0.1761 G 1.0105 88.7805 88 11.5896 41 7.225152016 87.85682144 73.6703 73 9.9045 188 0.1761
1015 1 14595.876 162.8461 G 158.5677 14672.876 6650 15572.9492 213 16.46815109 92.53383311 77.4252 77 10.3559 222 162.8461
1016 1 68.0762 0.7595 G 1.5517 144.0762 144 28.3366 107 11.67204475 92.85083542 76.2414 76 11.2339 120 0.7595
1017 1 21.0204 0.2345 G 1.0839 95.0204 90 22.3985 49 7.898653984 87.66262214 74.467 74 9.1084 188 0.2345
1018 1 10.027 0.1119 L 0.9341 85.027 85 12.1199 37 6.86366272 91.02557313 75.7308 75 10.6837 188 0.1119
1019 1 23.0638 0.2573 G 1.0844 98.0638 93 28.8742 47 7.735777855 90.42871719 75.9036 75 10.2858 172 0.2573
1020 1 59.1282 0.6597 G 1.3964 139.1282 137 16.8031 78 9.965575218 99.63603426 81.5663 80 13.0907 172 0.6597

Total number of rows: 54359

Table truncated, full table size 5844 Kbytes.




Supplementary file Size Download File type/resource
GSM82356.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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