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Sample GSM82360 Query DataSets for GSM82360
Status Public on Apr 30, 2007
Title 1250_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13755.8584 162.8308 G 144.3723 13834.8584 4092 15800.4619 172 14.79855442 95.82763142 78.8833 79 11.2184 124 162.8308
1002 1 1179.5103 13.9621 G 13.3852 1258.5103 1430 698.0027 98 11.17038345 94.02254471 79.663 79 10.015 187 13.9621
1003 1 20.08 0.2377 G 1.0143 101.08 103 18.5568 50 7.978845596 99.65308684 81.1056 81 12.4354 186 0.2377
1004 1 26.94 0.3189 G 1.1122 105.94 107 12.8987 50 7.978845596 95.25246896 80.0989 79 10.835 188 0.3189
1005 1 15.0588 0.1783 G 1.005 94.0588 93 12.7416 34 6.579524517 93.58895933 78.9011 79 9.726 188 0.1783
1006 1 26.3529 0.3119 G 1.1188 106.3529 105 16.6519 51 8.058238983 95.06382216 79.6538 80 10.0425 188 0.3119
1007 1 19.3878 0.2295 G 1.0554 97.3878 99 13.8517 49 7.898653984 92.27700597 78.7308 78 9.518 188 0.2295
1008 1 15184.167 179.738 G 159.9911 15264.167 5206 16824.3945 182 15.22266674 95.40636642 80.6583 80 10.2709 124 179.738
1009 1 246.4382 2.9171 G 3.5017 325.4382 345 105.2416 89 10.64510822 92.93773601 78.3187 79 9.2918 188 2.9171
1010 1 1151.1368 13.6262 G 13.3014 1228.1368 1434 649.2407 95 10.9980793 92.33169999 78.3978 77 10.2211 187 13.6262
1011 1 104.4815 1.2368 G 1.9205 184.4815 189 36.2839 81 10.15541267 96.05782652 80.6813 80 10.7052 188 1.2368
1012 1 178.1446 2.1087 G 2.7406 257.1446 278 76.0227 83 10.28002357 93.82883721 78.9945 79 9.8859 188 2.1087
1013 1 70.6962 0.8368 G 1.6146 148.6962 151 25.9592 79 10.02925301 92.09598595 78.1593 78 9.3973 188 0.8368
1014 1 22.6792 0.2685 G 1.0813 100.6792 99 12.4412 53 8.214724541 93.108429 78.0714 78 10.0723 188 0.2685
1015 1 13985.79 165.5526 G 140.6906 14068.79 3901 15923.4805 164 14.45030403 99.99808293 82.5333 83 11.3321 124 165.5526
1016 1 59.1618 0.7003 G 1.4811 137.1618 137 21.0298 68 9.304853439 92.60533018 78.8022 78 9.7369 188 0.7003
1017 1 22.3043 0.264 G 1.0698 103.3043 100 21.6864 46 7.653039932 96.56725199 81.0734 81 10.3782 183 0.264
1018 1 12.0571 0.1427 L 0.972 95.0571 97 13.6506 35 6.675580978 97.79044428 82.7933 83 9.8603 185 0.1427
1019 1 18.7805 0.2223 G 1.0208 102.7805 102 16.3551 41 7.225152016 100.6886131 84.4667 84 11.1257 186 0.2223
1020 1 54.4063 0.644 G 1.3235 140.4063 137 26.9036 64 9.027033806 106.0906219 87.4556 86 13.3937 186 0.644

Total number of rows: 54359

Table truncated, full table size 5825 Kbytes.




Supplementary file Size Download File type/resource
GSM82360.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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