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Sample GSM82523 Query DataSets for GSM82523
Status Public on Nov 17, 2005
Title SSLS vs SSHS-overnight 9-21-01-22_SS-6 Cy5_ss-3 cy3
Sample type RNA
 
Channel 1
Source name Rat kidney
Organism Rattus norvegicus
Characteristics SSHS
Extracted molecule total RNA
Label cy5
 
Channel 2
Source name Rat kidney
Organism Rattus norvegicus
Characteristics SSLS
Extracted molecule total RNA
Label cy3
 
 
Description none
Data processing global normalization
 
Submission date Nov 09, 2005
Last update date Nov 16, 2005
Contact name Mingyu Liang
E-mail(s) mliang@mcw.edu
Phone 414-456-8539
Organization name Medical College of Wisconsin
Department Physiology
Street address 8701 Watertown Plank Rd.
City Milwaukee
State/province WI
ZIP/Postal code 53226
Country USA
 
Platform ID GPL3061
Series (1)
GSE3588 Insights into Dahl salt-sensitive hypertension revealed

Data table header descriptions
ID_REF
VALUE Normalized natural log ratio of spot channels
Cy5 Flag
Cy5 Signal Mean
Cy5 non-detect. spots
Cy5 low-quality spots
Cy5 Bkg Mean
Cy5 Signal Median
Cy5 Bkg Median
Cy5 Signal Stdev
Cy5 Bkg Stdev
Cy5 Shape Regularity
Cy5 Empty
Cy3 Flag
Cy3 Signal Mean
Cy3 non-detect. spots
Cy3 low-quality spots
Cy3 Bkg Mean
Cy3 Signal Median
Cy3 Bkg Median
Cy3 Signal Stdev
Cy3 Bkg Stdev
Cy3 Shape Regularity
Cy3 Empty
Cy5-neg mean
Cy3-neg mean
Cy5/Cy3
Ln(Cy5/Cy3)
file 1+2 Ln(Cy5/Cy3)
duplicate
average
normalized

Data table
ID_REF VALUE Cy5 Flag Cy5 Signal Mean Cy5 non-detect. spots Cy5 low-quality spots Cy5 Bkg Mean Cy5 Signal Median Cy5 Bkg Median Cy5 Signal Stdev Cy5 Bkg Stdev Cy5 Shape Regularity Cy5 Empty Cy3 Flag Cy3 Signal Mean Cy3 non-detect. spots Cy3 low-quality spots Cy3 Bkg Mean Cy3 Signal Median Cy3 Bkg Median Cy3 Signal Stdev Cy3 Bkg Stdev Cy3 Shape Regularity Cy3 Empty Cy5-neg mean Cy3-neg mean Cy5/Cy3 Ln(Cy5/Cy3) file 1+2 Ln(Cy5/Cy3) duplicate average normalized
1 -0.240195088 0 1372 0 0 322 1065 233 1182 314 1 1 0 1545 0 0 314 1014 201 1556 330 1 1 897 1105 0.811446353 -0.208937003 -0.208937003 -0.219453174 -0.214195088 -0.240195088
2 -0.363050785 0 1475 0 0 350 1275 269 935 322 1 1 0 1750 0 0 271 1386 194 1428 276 1 1 1000 1310 0.762965764 -0.270542119 -0.270542119 -0.403559451 -0.337050785 -0.363050785
3 #DIV/0!
4 #DIV/0!
5 0.195419592 0 1053 0 0 204 751 127 1012 232 1 1 0 903 0 0 275 666 176 856 276 1 1 578 463 1.247846908 0.221419592 0.221419592 0.221419592 0.195419592
6 -0.354083661 0 7296 0 0 239 6809 183 5488 236 1 1 0 10248 0 0 242 9406 121 7917 280 1 1 6821 9808 0.695445886 -0.363202076 -0.363202076 -0.292965246 -0.328083661 -0.354083661
7 0.125230124 0 1653 0 0 206 1454 113 1348 230 1 1 0 1369 0 0 284 1075 199 1187 310 1 1 1178 929 1.26752788 0.237068452 0.237068452 0.065391795 0.151230124 0.125230124
8 -0.12646579 0 1746 0 0 216 1831 122 1042 240 1 1 0 1763 0 0 304 1595 203 1170 320 1 1 1271 1323 0.960526555 -0.04027365 -0.04027365 -0.160657929 -0.10046579 -0.12646579
9 0.093654254 0 1119 0 0 238 983 168 953 232 1 1 0 985 0 0 318 822 244 781 310 1 1 644 545 1.182165433 0.16734787 0.16734787 0.071960639 0.119654254 0.093654254
10 #DIV/0!
11 -0.550246123 0 5017 0 0 193 4759 125 3097 214 1 1 0 8108 0 0 285 7438 163 4740 309 1 1 4542 7668 0.592283623 -0.523769665 -0.523769665 -0.524722581 -0.524246123 -0.550246123
12 -0.067287943 0 4988 0 0 281 4331 235 3510 255 1 1 0 4459 0 0 328 3911 221 2958 342 1 1 4513 4019 1.122929037 0.115940483 0.115940483 -0.198516369 -0.041287943 -0.067287943
13 -0.418710239 0 6380 0 0 214 6073 131 4127 236 1 1 0 9024 0 0 319 8888 178 5776 350 1 1 5905 8585 0.68781097 -0.374241232 -0.374241232 -0.411179246 -0.392710239 -0.418710239
14 -0.359247252 0 8974 0 0 236 8407 180 5788 248 1 1 0 11636 0 0 310 11042 243 7835 315 1 1 8499 11196 0.759116166 -0.275600461 -0.275600461 -0.390894042 -0.333247252 -0.359247252
15 -0.266367351 0 2579 0 0 246 2323 162 1648 250 1 1 0 3102 0 0 257 2672 140 2350 298 1 1 2104 2662 0.790262155 -0.235390546 -0.235390546 -0.245344155 -0.240367351 -0.266367351
16 0.079178854 0 11978 0 0 255 10485 200 8459 246 1 1 0 10779 0 0 308 9709 179 7934 354 1 1 11503 10339 1.112579219 0.106680941 0.106680941 0.103676768 0.105178854 0.079178854
17 0.169767926 0 15424 0 0 257 12875 198 11989 248 1 1 0 12630 0 0 307 10577 205 9835 327 1 1 14949 12190 1.226278342 0.203983845 0.203983845 0.187552007 0.195767926 0.169767926
18 -0.216443957 0 1454 0 0 260 1002 185 1417 253 1 1 0 1670 0 0 348 1360 255 1463 361 1 1 979 1231 0.795664554 -0.228577596 -0.228577596 -0.152310319 -0.190443957 -0.216443957
19 0.013901145 3 2034 0 0 201 1150 126 4100 234 1 1 3 1915 0 0 333 1009 235 5133 334 1 1 1558 1475 1.056703125 0.055153802 0.055153802 0.024648489 0.039901145 0.013901145
20 #DIV/0!

Total number of rows: 3742

Table truncated, full table size 381 Kbytes.




Supplementary data files not provided
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