|
Status |
Public on May 25, 2024 |
Title |
Mi_Moving_rep3 |
Sample type |
SRA |
|
|
Source name |
whole organism
|
Organism |
Meloidogyne incognita |
Characteristics |
tissue: whole organism
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was harvested by treating eggs with lysis buffer. Details can refer to smart-seq2 peotocols. RNA libraries for RNA-seq were prepared using Smart-seq2 protocols.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
sequence read was trimmed for adaptor sequence/low-quality using fastp (v0.20.1) software read count extraction and normalization were performed using RSEM29 (v1.2.28) Assembly: The genome used in this study was sequenced and assembled in our own laboratory and has not yet been published. Supplementary files format and content: tab-delimited text file includes raw counts for each Sample
|
|
|
Submission date |
May 21, 2024 |
Last update date |
May 25, 2024 |
Contact name |
Dadong Dai |
E-mail(s) |
daidadong@mail.hzau.edu.cn
|
Organization name |
Huazhong Agricultural University
|
Department |
Department of Life science and technology
|
Lab |
BMB Lab
|
Street address |
1st street Shizishan
|
City |
Wuhan |
State/province |
Hubei |
ZIP/Postal code |
430070 |
Country |
China |
|
|
Platform ID |
GPL34500 |
Series (1) |
GSE268038 |
Plant parasitic nematodes single embryo RNA sequencing |
|
Relations |
BioSample |
SAMN36267704 |
SRA |
SRX20871779 |