|
Status |
Public on Jun 29, 2024 |
Title |
OCI-DS1 |
Sample type |
SRA |
|
|
Source name |
hematopoietic tissue
|
Organism |
Homo sapiens |
Characteristics |
tissue: hematopoietic tissue cell line: OCI-AML20 cell type: leukemia cells
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was eluted using CUT&Tag-IT Assay Kit (Active Motif) according to the manufacturer’s instructions. Libraries were prepared using CUT&Tag-IT Assay Kit (Active Motif) according to the manufacturer’s instructions.
|
|
|
Library strategy |
OTHER |
Library source |
genomic |
Library selection |
other |
Instrument model |
HiSeq X Ten |
|
|
Data processing |
Peak calling and annotation were performed through the csaw bioconductor package. Assembly: hg38 Supplementary files format and content: bigwig
|
|
|
Submission date |
Jun 25, 2024 |
Last update date |
Jun 29, 2024 |
Contact name |
Hiroyoshi Kunimoto |
E-mail(s) |
hiroyoshikunimoto@gmail.com
|
Organization name |
Yokohama City University Graduate School of Medicine
|
Department |
Department of Stem Cell and Immune Regulation
|
Street address |
3-9 Fukuura, Kanazawa
|
City |
Yokohama |
ZIP/Postal code |
236-0004 |
Country |
Japan |
|
|
Platform ID |
GPL20795 |
Series (1) |
GSE270760 |
PRC2-mediated apoptosis evasion is a therapeutic target of MDS/AML harboring inv(3)/t(3;3) and monosomy 7 (CUT&Tag) |
|
Relations |
BioSample |
SAMN42038626 |
SRA |
SRX25051027 |