NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE270760 Query DataSets for GSE270760
Status Public on Jun 29, 2024
Title PRC2-mediated apoptosis evasion is a therapeutic target of MDS/AML harboring inv(3)/t(3;3) and monosomy 7 (CUT&Tag)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Myelodysplastic syndromes (MDS) and acute myeloid leukemia (AML) harboring both inv(3)/t(3;3) and monosomy 7 (-7) are highly aggressive myeloid cancers whose molecular pathogenesis and therapeutic vulnerability remain elusive. High throughput drug screens, CUT&Tag/RNA sequence and functional assays using human MDS/AML cells revealed that EZH2 inhibitors efficiently induce apoptosis preferentially in MDS/AML with inv(3)/t(3;3) and -7 through activation of GADD45γ-p38-p53 axis. EVI1 activated in 3q-rearranged MDS/AML was responsible for GADD45γ silencing by direct binding to its consensus sequence within GADD45γ promoter and recruitment of PRC2 complex via interaction with EZH2, which can be therapeutically targeted by EZH2 inhibition. MDS/AML with inv(3)/t(3;3) and -7 showed preferential sensitivity to EZH2 inhibition in both mouse model and patient samples. Thus, MDS/AML cells with inv(3)/t(3;3) and -7 possess apoptosis evasion mechanism through EVI1-PRC2-mediated repression of GADD45γ-p38-p53 axis, which is a potential therapeutic vulnerability in MDS/AML patients with these high-risk cytogenetic lesions.
 
Overall design To explore the downstream target of EZH2 inhibition relevant to apoptosis induction in YCU-AML1 and OCI-AML20 cells, we performed CUT&Tag sequence (CUT&Tag-seq) for H3K27me3 using OCI-AML20, YCU-AML1, FKH-1 and Kasumi-3 cells treated with either vehicle or valemetostat 300nM for 7 days.
 
Contributor(s) Kunimoto H
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 25, 2024
Last update date Jun 29, 2024
Contact name Hiroyoshi Kunimoto
E-mail(s) hiroyoshikunimoto@gmail.com
Organization name Yokohama City University Graduate School of Medicine
Department Department of Stem Cell and Immune Regulation
Street address 3-9 Fukuura, Kanazawa
City Yokohama
ZIP/Postal code 236-0004
Country Japan
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (24)
GSM8351461 OCI-Vehicle
GSM8351462 OCI-Ve1
GSM8351463 OCI-Ve2
Relations
BioProject PRJNA1128130

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE270760_RAW.tar 2.1 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap