|
| Status |
Public on Jun 29, 2024 |
| Title |
YCU-DS1 |
| Sample type |
SRA |
| |
|
| Source name |
hematopoietic tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: hematopoietic tissue
cell line: YCU-AML1
cell type: leukemia cells
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was eluted using CUT&Tag-IT Assay Kit (Active Motif) according to the manufacturer’s instructions.
Libraries were prepared using CUT&Tag-IT Assay Kit (Active Motif) according to the manufacturer’s instructions.
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
HiSeq X Ten |
| |
|
| Data processing |
Peak calling and annotation were performed through the csaw bioconductor package.
Assembly: hg38
Supplementary files format and content: bigwig
|
| |
|
| Submission date |
Jun 25, 2024 |
| Last update date |
Jun 29, 2024 |
| Contact name |
Hiroyoshi Kunimoto |
| E-mail(s) |
hiroyoshikunimoto@gmail.com
|
| Organization name |
Yokohama City University Graduate School of Medicine
|
| Department |
Department of Stem Cell and Immune Regulation
|
| Street address |
3-9 Fukuura, Kanazawa
|
| City |
Yokohama |
| ZIP/Postal code |
236-0004 |
| Country |
Japan |
| |
|
| Platform ID |
GPL20795 |
| Series (1) |
| GSE270760 |
PRC2-mediated apoptosis evasion is a therapeutic target of MDS/AML harboring inv(3)/t(3;3) and monosomy 7 (CUT&Tag) |
|
| Relations |
| BioSample |
SAMN42038620 |
| SRA |
SRX25051033 |
