 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jun 27, 2024 |
| Title |
Normoxia Hepatocyte 2 |
| Sample type |
SRA |
| |
|
| Source name |
hepatocytes
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: hepatocytes
cell line: Primary
cell type: Lonza (HUCPG)
treatment: 36h normoxic culture
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Nucleospin RNA, Macherey Nagel
NEBNext Ultra II RNA Library Prep for Illumina, New England Biolabs
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
Trimmomatic
FastQC
STAR alignment
FeatureCounts Counts
Assembly: GRCh38.p14
Supplementary files format and content: tab delimited text file for each sample, with raw counts
|
| |
|
| Submission date |
Jun 27, 2024 |
| Last update date |
Jun 27, 2024 |
| Contact name |
Zachary J Rogers |
| Organization name |
Northeastern University
|
| Department |
Chemical Engineering
|
| Street address |
360 Huntington Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL21290 |
| Series (1) |
| GSE270930 |
Controlling pericellular oxygen tension in cell culture reveals distinct breast cancer responses to low oxygen tensions |
|
| Relations |
| BioSample |
SAMN42137827 |
| SRA |
SRX25126755 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8365309_normoxia2.counts.txt.gz |
4.2 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
