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GEO accession:
Sample GSM83999
Query DataSets for GSM83999
Status
Public on Jan 01, 2006
Title
Rat_Normal_AVCN
Sample type
SAGE
Anchor
NlaIII
Tag Count
34200
Tag Length
10
Source name
Anterior Ventral Cochlear Nucleus
Organism
Rattus norvegicus
Characteristics
Strain: Brown Norway
Gender: Female
Age: 45 days
Tissue: Brain
Region: Anterior ventral cochlear nucleus
Extracted molecule
total RNA
Extraction protocol
Trizol Protocol
Description
The anterior ventral cochlear nucleus was dissected from 40 normal, female, 45 day old, Brown Norway rat brains and total RNA extracted
Data processing
Sequences were imported into eSAGE for tag extraction and counting
Submission date
Nov 17, 2005
Last update date
Nov 19, 2008
Contact name
David R Friedland
E-mail(s)
dfriedla@mcw.edu
Phone
414-805-5625
Fax
414-805-7936
URL
http://www.mcw.edu
Organization name
Medical College of Wisconsin
Department
Otolaryngology and Communication Sciences
Street address
8701 Watertown Plank Rd
City
Milwaukee
State/province
WI
ZIP/Postal code
53226
Country
USA
Platform ID
GPL23
Series (1)
GSE3628
Rat Normal Cochlear Nucleus
Data table header descriptions
TAG
12322
COUNT
34200
TPM
tags per million
Data table
TAG
COUNT
TPM
ATAACACATA
1642
48011.70
ATACTGACAC
814
23801.17
GCTTCATCCA
525
15350.88
TAGGTACAGG
291
8508.77
AGCCGTCCCT
270
7894.74
AAAAAAAAAA
236
6900.58
GCCTTCCTCA
236
6900.58
GATGCCCCCC
212
6198.83
AATCGGAGGC
172
5029.24
CACATACAAA
167
4883.04
TCAGGCTGCC
163
4766.08
GAATAATAAA
139
4064.33
ACGTCTCAAA
129
3771.93
GTGGCTCACA
120
3508.77
ATGACTATTA
113
3304.09
CTAAGGAAGT
107
3128.65
CAAACATCCA
104
3040.94
TGGGTTGTCT
98
2865.50
CACAGCGTTG
97
2836.26
AAAAATCATC
92
2690.06
Total number of rows:
12322
Table truncated, full table size
230 Kbytes
.
Supplementary data files not provided
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