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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV82.03_CONTROL_day10_Slide54 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV82.03_CONTROL_day10
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 10 post saline injection/control
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
8101.6 |
9.1 |
16375.8 |
35.8 |
1.673 |
2.0883 |
-0.415 |
-0.8029 |
| 2 |
478.4 |
2.5 |
539.1 |
4.3 |
-1.0627 |
-0.8467 |
-0.216 |
-0.4176 |
| 3 |
3741.6 |
5.3 |
2159.8 |
13.5 |
0.9268 |
0.346 |
0.581 |
1.1227 |
| 4 |
3214 |
1.7 |
1907.9 |
7 |
0.7809 |
0.2418 |
0.539 |
1.0421 |
| 5 |
1070.9 |
0.9 |
571.2 |
6.7 |
-0.2805 |
-0.8005 |
0.52 |
1.0052 |
| 6 |
1016.8 |
2.1 |
1701 |
6.6 |
-0.3317 |
0.1431 |
-0.475 |
-0.9177 |
| 7 |
280.8 |
1.3 |
224 |
5.8 |
NULL |
NULL |
NULL |
NULL |
| 8 |
412.2 |
1.6 |
1001.5 |
7.7 |
-1.2053 |
-0.3149 |
-0.89 |
-1.7211 |
| 9 |
2781.8 |
0.8 |
4073.8 |
6.6 |
0.6417 |
0.8947 |
-0.253 |
-0.4889 |
| 10 |
198.7 |
1.4 |
157.3 |
11.1 |
NULL |
NULL |
NULL |
NULL |
| 11 |
292.1 |
2 |
104.6 |
12.8 |
NULL |
NULL |
NULL |
NULL |
| 12 |
712.7 |
3 |
1375.3 |
12.1 |
-0.6769 |
-0.0436 |
-0.633 |
-1.2242 |
| 13 |
326 |
2 |
410 |
11.5 |
-1.4338 |
-1.0993 |
-0.334 |
-0.6466 |
| 14 |
859 |
0.7 |
220.3 |
9.6 |
NULL |
NULL |
NULL |
NULL |
| 15 |
1869.5 |
1.3 |
2090.8 |
5.1 |
0.2576 |
0.3214 |
-0.064 |
-0.1233 |
| 16 |
487.2 |
1 |
204.6 |
4.9 |
-1.0419 |
-1.6924 |
0.651 |
1.2575 |
| 17 |
2058 |
0.9 |
2645.5 |
8.8 |
0.3506 |
0.5226 |
-0.172 |
-0.3325 |
| 18 |
193.9 |
1.8 |
203.9 |
6 |
-1.9383 |
-1.7 |
-0.238 |
-0.4605 |
| 19 |
590.3 |
0.3 |
166.1 |
5.9 |
NULL |
NULL |
NULL |
NULL |
| 20 |
702.4 |
3.5 |
943.5 |
6.9 |
-0.6917 |
-0.3659 |
-0.326 |
-0.6298 |
Total number of rows: 4803
Table truncated, full table size 237 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85064_Ch1.imagene.gz |
843.1 Kb |
(ftp)(http) |
IMAGENE |
| GSM85064_Ch2.imagene.gz |
861.4 Kb |
(ftp)(http) |
IMAGENE |
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