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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV82.07_HYP_day10_Slide56 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV82.07_HYP_day10
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 10 post 30mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
6175.9 |
1 |
13535.9 |
5.7 |
1.689 |
2.0342 |
-0.345 |
-0.6691 |
| 2 |
340.7 |
2.8 |
535 |
3.4 |
-1.0536 |
-0.7789 |
-0.275 |
-0.5323 |
| 3 |
1555.4 |
0.6 |
1306.2 |
4.7 |
0.3873 |
-0.0007 |
0.388 |
0.752 |
| 4 |
2100.5 |
0.9 |
1681.9 |
3.5 |
0.6708 |
0.2203 |
0.451 |
0.8732 |
| 5 |
710.6 |
1.3 |
591 |
3.1 |
-0.3535 |
-0.6914 |
0.338 |
0.6549 |
| 6 |
962.3 |
1.6 |
1617.3 |
4.2 |
-0.0671 |
0.1858 |
-0.253 |
-0.4902 |
| 7 |
192.8 |
1.3 |
155.4 |
5.1 |
NULL |
NULL |
NULL |
NULL |
| 8 |
403.5 |
3.4 |
958 |
2.2 |
-0.8938 |
-0.269 |
-0.625 |
-1.211 |
| 9 |
1850 |
1.6 |
3390.9 |
3.8 |
0.5505 |
0.8305 |
-0.28 |
-0.5427 |
| 10 |
101.9 |
3.2 |
109.5 |
7.2 |
NULL |
NULL |
NULL |
NULL |
| 11 |
206.5 |
2.1 |
74.6 |
3.9 |
NULL |
NULL |
NULL |
NULL |
| 12 |
536 |
3 |
1355.4 |
3.7 |
-0.6231 |
0.0321 |
-0.655 |
-1.2699 |
| 13 |
297.5 |
2.5 |
410.3 |
2.3 |
-1.1814 |
-1.0089 |
-0.172 |
-0.3343 |
| 14 |
979.2 |
3.4 |
347.9 |
64 |
NULL |
NULL |
NULL |
NULL |
| 15 |
1582.9 |
1.9 |
2346.4 |
3.9 |
0.4031 |
0.51 |
-0.107 |
-0.2073 |
| 16 |
383.4 |
1.2 |
182.1 |
6.9 |
-0.9371 |
-1.7436 |
0.807 |
1.5632 |
| 17 |
1184.1 |
2.3 |
2064 |
5.5 |
0.1284 |
0.3977 |
-0.269 |
-0.522 |
| 18 |
193.2 |
2.9 |
213.9 |
3.2 |
-1.595 |
-1.5832 |
-0.012 |
-0.0229 |
| 19 |
397.6 |
2 |
107.1 |
2.9 |
NULL |
NULL |
NULL |
NULL |
| 20 |
365.1 |
4.8 |
738.4 |
5.1 |
-0.9929 |
-0.4994 |
-0.494 |
-0.9565 |
Total number of rows: 4803
Table truncated, full table size 235 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85066_Ch1.imagene.gz |
832.4 Kb |
(ftp)(http) |
IMAGENE |
| GSM85066_Ch2.imagene.gz |
848.9 Kb |
(ftp)(http) |
IMAGENE |
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