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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV83.05_HYP_day10_Slide57 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV83.05_HYP_day10
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 10 post 30mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
7453.8 |
2.5 |
14436.5 |
7.6 |
1.6812 |
2.0402 |
-0.359 |
-0.7298 |
| 2 |
630.2 |
4.3 |
685.3 |
5.8 |
-0.613 |
-0.5783 |
-0.035 |
-0.0705 |
| 3 |
2323.6 |
2.2 |
1660.9 |
11.1 |
0.601 |
0.1819 |
0.419 |
0.8522 |
| 4 |
1652.4 |
0.6 |
1339.2 |
5.5 |
0.2858 |
-0.0005 |
0.286 |
0.582 |
| 5 |
756.5 |
2.6 |
521.6 |
9.8 |
-0.4406 |
-0.8212 |
0.381 |
0.7737 |
| 6 |
1240.1 |
2.5 |
1677.1 |
3.9 |
0.0184 |
0.1939 |
-0.176 |
-0.3568 |
| 7 |
225.3 |
2.2 |
208.6 |
8.6 |
NULL |
NULL |
NULL |
NULL |
| 8 |
525.2 |
1.5 |
1019.1 |
4.8 |
-0.7781 |
-0.2351 |
-0.543 |
-1.1039 |
| 9 |
3034.6 |
6.9 |
4332.3 |
9.2 |
0.8471 |
1.0074 |
-0.16 |
-0.3259 |
| 10 |
148.6 |
1.2 |
118.7 |
4.7 |
NULL |
NULL |
NULL |
NULL |
| 11 |
157.8 |
1.3 |
64.8 |
4.5 |
NULL |
NULL |
NULL |
NULL |
| 12 |
715.8 |
1.4 |
1253.7 |
8.7 |
-0.4905 |
-0.0594 |
-0.431 |
-0.8764 |
| 13 |
227.7 |
1.8 |
307 |
6.1 |
-1.5567 |
-1.2762 |
-0.281 |
-0.5704 |
| 14 |
615.8 |
82 |
377.2 |
11.9 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2094.8 |
4.1 |
2381 |
6.7 |
0.5041 |
0.4938 |
0.01 |
0.021 |
| 16 |
394.6 |
2.2 |
214.9 |
3.9 |
-1.0456 |
-1.5802 |
0.535 |
1.0869 |
| 17 |
2449.8 |
1.7 |
2834 |
6.1 |
0.6502 |
0.6436 |
0.007 |
0.0135 |
| 18 |
330.8 |
2.2 |
271.5 |
4.7 |
-1.2099 |
-1.3796 |
0.17 |
0.3451 |
| 19 |
416.4 |
2.8 |
127.8 |
9.1 |
NULL |
NULL |
NULL |
NULL |
| 20 |
588.1 |
1.8 |
859 |
5.3 |
-0.6736 |
-0.3827 |
-0.291 |
-0.5914 |
Total number of rows: 4803
Table truncated, full table size 236 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85067_Ch1.imagene.gz |
841.2 Kb |
(ftp)(http) |
IMAGENE |
| GSM85067_Ch2.imagene.gz |
860.2 Kb |
(ftp)(http) |
IMAGENE |
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