 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 01, 2006 |
| Title |
RV63.01_CONTROL_day19_Slide33 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV63.01_CONTROL_day19
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 19 post saline injection/control
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
7606.1 |
2.1 |
8983.1 |
6.8 |
1.8845 |
2.1168 |
-0.232 |
-0.452 |
| 2 |
304.9 |
1.7 |
227.6 |
3.8 |
-1.3712 |
-1.1713 |
-0.200 |
-0.389 |
| 3 |
1951.6 |
16.6 |
782.8 |
6.3 |
1.1986 |
0.5540 |
0.645 |
1.253 |
| 4 |
1680.3 |
0.8 |
1083.2 |
29.4 |
0.3586 |
0.2089 |
0.150 |
0.291 |
| 5 |
593.1 |
2.0 |
310.8 |
7.5 |
-0.6967 |
-0.9004 |
0.204 |
0.396 |
| 6 |
1136.0 |
0.2 |
846.1 |
3.0 |
-0.0367 |
0.0102 |
-0.047 |
-0.091 |
| 7 |
286.7 |
1.7 |
169.4 |
10.8 |
NULL |
NULL |
NULL |
NULL |
| 8 |
450.0 |
1.2 |
621.8 |
2.7 |
-0.9749 |
-0.2649 |
-0.710 |
-1.380 |
| 9 |
2739.4 |
1.5 |
2360.8 |
17.6 |
0.8523 |
0.9206 |
-0.068 |
-0.133 |
| 10 |
224.6 |
1.1 |
65.3 |
4.9 |
NULL |
NULL |
NULL |
NULL |
| 11 |
394.2 |
3.3 |
82.0 |
12.3 |
NULL |
NULL |
NULL |
NULL |
| 12 |
571.2 |
0.9 |
1001.9 |
8.0 |
-0.7329 |
0.1568 |
-0.890 |
-1.729 |
| 13 |
358.3 |
6.5 |
322.1 |
7.3 |
-1.2210 |
-0.8675 |
-0.353 |
-0.687 |
| 14 |
547.3 |
6.2 |
240.7 |
6.1 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2611.6 |
5.8 |
1870.6 |
12.2 |
0.8024 |
0.7141 |
0.088 |
0.172 |
| 16 |
494.6 |
1.1 |
144.5 |
4.5 |
-0.8789 |
-1.5886 |
0.710 |
1.380 |
| 17 |
1574.9 |
1.5 |
1636.7 |
3.1 |
0.2927 |
0.5993 |
-0.307 |
-0.596 |
| 18 |
280.0 |
1.5 |
142.1 |
4.2 |
-1.4573 |
-1.6025 |
0.145 |
0.282 |
| 19 |
404.9 |
0.6 |
89.6 |
7.4 |
NULL |
NULL |
NULL |
NULL |
| 20 |
395.3 |
2.1 |
414.7 |
5.0 |
-1.1086 |
-0.6328 |
-0.476 |
-0.925 |
Total number of rows: 4803
Table truncated, full table size 237 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85122_Ch1.imagene.gz |
839.4 Kb |
(ftp)(http) |
IMAGENE |
| GSM85122_Ch2.imagene.gz |
845.3 Kb |
(ftp)(http) |
IMAGENE |
|
|
|
|
 |
