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Status |
Public on Feb 01, 2006 |
Title |
RV63.03_CONTROL_day19_Slide34 |
Sample type |
RNA |
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Channel 1 |
Source name |
RV63.03_CONTROL_day19
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Organism |
Rattus norvegicus |
Characteristics |
Strain: Wistar, Sex: male
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Biomaterial provider |
Harlan, Zeist, The Netherlands
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Extracted molecule |
total RNA |
Extraction protocol |
Polytron - TriZol
|
Label |
Cy5
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Channel 2 |
Source name |
Reference pool
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Organism |
Rattus norvegicus |
Characteristics |
pooled total RNA from interventricular septum tissue
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Extracted molecule |
total RNA |
Extraction protocol |
Polytron - TriZol
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Label |
Cy3
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Description |
day 19 post saline injection/control
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Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
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Submission date |
Nov 23, 2005 |
Last update date |
Apr 23, 2012 |
Contact name |
Henk Buermans |
E-mail(s) |
h.buermans@lumc.nl
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Phone |
+31715268558
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Organization name |
Leiden University Medical Center
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Department |
Human Genetics
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Lab |
Leiden Genome Technology Center
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Street address |
Albinusdreef 2
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City |
Leiden |
State/province |
ZH |
ZIP/Postal code |
2300 RC |
Country |
Netherlands |
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Platform ID |
GPL1397 |
Series (1) |
GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
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Data table header descriptions |
ID_REF |
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CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
Data table |
ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
1 |
6119.8 |
0.9 |
6690.1 |
4.3 |
1.8020 |
1.9364 |
-0.134 |
-0.234 |
2 |
239.8 |
1.5 |
181.0 |
2.0 |
-1.3491 |
-1.0100 |
-0.339 |
-0.591 |
3 |
1631.9 |
4.5 |
605.5 |
0.4 |
1.1899 |
0.5397 |
0.650 |
1.134 |
4 |
1285.1 |
1.1 |
949.0 |
0.9 |
0.2860 |
0.3465 |
-0.060 |
-0.105 |
5 |
927.6 |
1.4 |
317.7 |
1.6 |
-0.0311 |
-0.5475 |
0.516 |
0.900 |
6 |
939.0 |
0.8 |
702.0 |
1.2 |
-0.0187 |
0.1006 |
-0.119 |
-0.208 |
7 |
213.5 |
1.0 |
95.0 |
12.0 |
NULL |
NULL |
NULL |
NULL |
8 |
368.3 |
1.9 |
395.3 |
1.1 |
-0.9315 |
-0.3676 |
-0.564 |
-0.983 |
9 |
1299.7 |
0.7 |
1274.8 |
0.6 |
0.2973 |
0.5872 |
-0.290 |
-0.505 |
10 |
64.9 |
5.5 |
34.1 |
9.4 |
NULL |
NULL |
NULL |
NULL |
11 |
222.7 |
2.1 |
31.4 |
0.9 |
NULL |
NULL |
NULL |
NULL |
12 |
347.6 |
1.1 |
847.1 |
2.6 |
-0.9857 |
0.2523 |
-1.238 |
-2.158 |
13 |
199.2 |
1.3 |
171.5 |
1.3 |
-1.5295 |
-1.0513 |
-0.478 |
-0.834 |
14 |
559.7 |
3.4 |
96.9 |
17.4 |
NULL |
NULL |
NULL |
NULL |
15 |
2219.9 |
0.3 |
1631.2 |
1.5 |
0.8174 |
0.7874 |
0.030 |
0.052 |
16 |
329.1 |
0.4 |
88.8 |
4.3 |
-1.0369 |
-1.6216 |
0.585 |
1.019 |
17 |
1212.1 |
1.1 |
1274.7 |
0.4 |
0.2291 |
0.5872 |
-0.358 |
-0.624 |
18 |
238.7 |
0.5 |
81.0 |
5.0 |
-1.3496 |
-1.7077 |
0.358 |
0.624 |
19 |
210.8 |
0.5 |
26.7 |
3.9 |
NULL |
NULL |
NULL |
NULL |
20 |
262.1 |
2.6 |
234.6 |
0.9 |
-1.2664 |
-0.7931 |
-0.473 |
-0.825 |
Total number of rows: 4803
Table truncated, full table size 235 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM85123_Ch1.imagene.gz |
852.3 Kb |
(ftp)(http) |
IMAGENE |
GSM85123_Ch2.imagene.gz |
843.3 Kb |
(ftp)(http) |
IMAGENE |
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