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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV63.04_CONTROL_day19_Slide35 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV63.04_CONTROL_day19
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 19 post saline injection/control
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
6078.8 |
1.9 |
9276.4 |
12.6 |
1.4927 |
1.8589 |
-0.366 |
-0.661 |
| 2 |
454.2 |
2.2 |
387.3 |
20.6 |
-1.0917 |
-1.0442 |
-0.047 |
-0.086 |
| 3 |
1955.2 |
16.0 |
1050.4 |
33.6 |
1.0415 |
0.4926 |
0.549 |
0.991 |
| 4 |
1761.9 |
1.7 |
1285.5 |
11.2 |
0.2605 |
0.0756 |
0.185 |
0.334 |
| 5 |
917.4 |
9.0 |
594.5 |
12.7 |
-0.3974 |
-0.6293 |
0.232 |
0.419 |
| 6 |
1071.9 |
1.9 |
1370.2 |
7.1 |
-0.2345 |
0.1362 |
-0.371 |
-0.669 |
| 7 |
528.5 |
0.2 |
274.0 |
7.0 |
NULL |
NULL |
NULL |
NULL |
| 8 |
515.1 |
0.6 |
657.9 |
7.1 |
-0.9627 |
-0.5284 |
-0.434 |
-0.784 |
| 9 |
3280.6 |
3.8 |
3309.1 |
9.3 |
0.8785 |
0.9309 |
-0.052 |
-0.095 |
| 10 |
212.8 |
1.0 |
104.3 |
13.4 |
NULL |
NULL |
NULL |
NULL |
| 11 |
362.7 |
0.4 |
98.3 |
9.8 |
NULL |
NULL |
NULL |
NULL |
| 12 |
347.8 |
3.2 |
984.1 |
13.5 |
-1.3613 |
-0.1692 |
-1.192 |
-2.152 |
| 13 |
322.7 |
2.2 |
447.4 |
10.1 |
-1.4334 |
-0.8859 |
-0.547 |
-0.988 |
| 14 |
590.5 |
7.8 |
83.3 |
21.0 |
NULL |
NULL |
NULL |
NULL |
| 15 |
3198.2 |
0.9 |
2730.2 |
5.2 |
0.8540 |
0.7589 |
0.095 |
0.172 |
| 16 |
535.7 |
0.6 |
212.7 |
7.3 |
-0.9237 |
-1.5650 |
0.641 |
1.157 |
| 17 |
1686.4 |
2.3 |
2194.0 |
33.1 |
0.2165 |
0.5503 |
-0.334 |
-0.603 |
| 18 |
314.0 |
1.2 |
207.6 |
5.7 |
-1.4576 |
-1.5808 |
0.123 |
0.222 |
| 19 |
646.9 |
1.6 |
105.5 |
10.2 |
NULL |
NULL |
NULL |
NULL |
| 20 |
606.4 |
0.7 |
709.4 |
9.1 |
-0.8003 |
-0.4626 |
-0.338 |
-0.610 |
Total number of rows: 4803
Table truncated, full table size 240 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85124_Ch1.imagene.gz |
844.1 Kb |
(ftp)(http) |
IMAGENE |
| GSM85124_Ch2.imagene.gz |
858.3 Kb |
(ftp)(http) |
IMAGENE |
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