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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 01, 2006 |
| Title |
RV63.06_HYP_day19_Slide36 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV63.06_HYP_day19
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 19 post 30mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
5061.9 |
2.5 |
6676.9 |
4.5 |
1.5642 |
1.8714 |
-0.307 |
-0.629 |
| 2 |
263.4 |
2.3 |
237.1 |
4.7 |
-1.3410 |
-1.0950 |
-0.246 |
-0.503 |
| 3 |
1460.1 |
0.4 |
739.4 |
1.9 |
1.0251 |
0.5337 |
0.491 |
1.006 |
| 4 |
1682.6 |
2.9 |
1072.8 |
3.3 |
0.4835 |
0.2537 |
0.230 |
0.470 |
| 5 |
840.1 |
3.7 |
481.0 |
2.5 |
-0.1999 |
-0.4570 |
0.257 |
0.526 |
| 6 |
789.1 |
2.7 |
854.7 |
4.2 |
-0.2603 |
0.0512 |
-0.312 |
-0.638 |
| 7 |
222.2 |
1.9 |
152.1 |
9.2 |
NULL |
NULL |
NULL |
NULL |
| 8 |
367.0 |
1.6 |
428.0 |
3.3 |
-1.0118 |
-0.5623 |
-0.449 |
-0.920 |
| 9 |
1421.6 |
0.2 |
1584.0 |
3.5 |
0.3198 |
0.5987 |
-0.279 |
-0.571 |
| 10 |
114.7 |
6.0 |
44.7 |
3.1 |
NULL |
NULL |
NULL |
NULL |
| 11 |
244.7 |
3.3 |
40.9 |
4.1 |
NULL |
NULL |
NULL |
NULL |
| 12 |
750.0 |
3.7 |
1193.1 |
5.4 |
-0.3115 |
0.3463 |
-0.658 |
-1.347 |
| 13 |
401.2 |
1.7 |
273.8 |
4.0 |
-0.9239 |
-0.9632 |
0.039 |
0.080 |
| 14 |
564.7 |
1.2 |
132.4 |
31.6 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2424.7 |
1.2 |
2128.0 |
3.9 |
0.8428 |
0.8600 |
-0.017 |
-0.035 |
| 16 |
256.3 |
1.6 |
132.5 |
7.2 |
-1.3652 |
-1.6407 |
0.276 |
0.564 |
| 17 |
2620.6 |
0.9 |
2269.3 |
4.9 |
0.9191 |
0.9165 |
0.003 |
0.005 |
| 18 |
178.3 |
2.1 |
129.8 |
5.5 |
-1.7262 |
-1.6482 |
-0.078 |
-0.160 |
| 19 |
261.9 |
4.0 |
49.6 |
3.1 |
NULL |
NULL |
NULL |
NULL |
| 20 |
346.4 |
2.8 |
350.0 |
3.7 |
-1.0719 |
-0.7427 |
-0.329 |
-0.674 |
Total number of rows: 4803
Table truncated, full table size 236 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85125_Ch1.imagene.gz |
842.6 Kb |
(ftp)(http) |
IMAGENE |
| GSM85125_Ch2.imagene.gz |
838.4 Kb |
(ftp)(http) |
IMAGENE |
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