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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV63.09_CHF_day19_Slide45 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV63.09_CHF_day19
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 19 post 80mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
4122.5 |
4.8 |
5606.3 |
2.9 |
1.2425 |
1.7484 |
-0.506 |
-0.852 |
| 2 |
388.6 |
6.1 |
187.7 |
19.5 |
-1.3608 |
-1.3743 |
0.013 |
0.023 |
| 3 |
1291.1 |
0.4 |
554.1 |
1.8 |
0.6911 |
0.2737 |
0.417 |
0.703 |
| 4 |
2958.0 |
5.2 |
1206.0 |
3.6 |
0.8782 |
0.3777 |
0.501 |
0.843 |
| 5 |
1475.1 |
8.7 |
595.6 |
3.0 |
0.1114 |
-0.2525 |
0.364 |
0.612 |
| 6 |
1105.0 |
3.3 |
788.2 |
2.9 |
-0.2019 |
-0.0017 |
-0.200 |
-0.337 |
| 7 |
421.1 |
0.3 |
199.1 |
2.1 |
NULL |
NULL |
NULL |
NULL |
| 8 |
486.5 |
0.8 |
377.7 |
2.2 |
-1.0992 |
-0.6588 |
-0.440 |
-0.741 |
| 9 |
2212.6 |
1.3 |
2102.6 |
9.4 |
0.5614 |
0.8714 |
-0.310 |
-0.522 |
| 10 |
386.5 |
4.8 |
55.0 |
3.5 |
NULL |
NULL |
NULL |
NULL |
| 11 |
826.2 |
3.1 |
75.2 |
4.4 |
NULL |
NULL |
NULL |
NULL |
| 12 |
836.2 |
14.6 |
647.8 |
15.6 |
-0.2705 |
0.3281 |
-0.599 |
-1.008 |
| 13 |
378.0 |
2.6 |
288.2 |
3.2 |
-1.3814 |
-0.9043 |
-0.477 |
-0.803 |
| 14 |
857.2 |
1.6 |
110.7 |
18.8 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2986.1 |
2.7 |
2103.4 |
2.9 |
0.8895 |
0.8745 |
0.015 |
0.025 |
| 16 |
581.5 |
3.1 |
162.6 |
2.8 |
-0.9077 |
-1.4199 |
0.512 |
0.862 |
| 17 |
1994.0 |
126.3 |
836.5 |
28.9 |
-0.5559 |
0.1069 |
-0.663 |
-1.116 |
| 18 |
312.5 |
2.7 |
127.7 |
2.8 |
-1.5920 |
-1.6390 |
0.047 |
0.079 |
| 19 |
579.1 |
1.9 |
29.5 |
1.6 |
NULL |
NULL |
NULL |
NULL |
| 20 |
608.8 |
2.4 |
376.0 |
2.9 |
-0.8561 |
-0.6643 |
-0.192 |
-0.323 |
Total number of rows: 4803
Table truncated, full table size 238 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85128_Ch1.imagene.gz |
845.5 Kb |
(ftp)(http) |
IMAGENE |
| GSM85128_Ch2.imagene.gz |
833.9 Kb |
(ftp)(http) |
IMAGENE |
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