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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 01, 2006 |
| Title |
RV64.02_CONTROL_day25_Slide41 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV64.02_CONTROL_day25
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 25 post saline injection/control
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
4191.8 |
8.5 |
10983.4 |
90.5 |
1.5547 |
1.9384 |
-0.384 |
-0.712 |
| 2 |
411.7 |
1.5 |
456.0 |
9.9 |
-0.7542 |
-1.0303 |
0.276 |
0.512 |
| 3 |
859.9 |
0.2 |
1206.8 |
16.0 |
0.6149 |
0.4985 |
0.116 |
0.216 |
| 4 |
1588.5 |
2.0 |
2067.2 |
14.4 |
0.5380 |
0.3660 |
0.172 |
0.319 |
| 5 |
916.1 |
5.6 |
867.3 |
12.3 |
0.0076 |
-0.4352 |
0.443 |
0.822 |
| 6 |
769.4 |
2.6 |
1471.0 |
11.7 |
-0.1564 |
0.0539 |
-0.210 |
-0.390 |
| 7 |
276.7 |
0.9 |
308.8 |
11.3 |
NULL |
NULL |
NULL |
NULL |
| 8 |
256.1 |
1.0 |
734.6 |
13.6 |
-1.2079 |
-0.5911 |
-0.617 |
-1.144 |
| 9 |
1870.6 |
0.4 |
3384.8 |
12.8 |
0.6952 |
0.8199 |
-0.125 |
-0.231 |
| 10 |
110.9 |
2.3 |
120.4 |
17.7 |
NULL |
NULL |
NULL |
NULL |
| 11 |
254.7 |
2.9 |
152.0 |
18.3 |
NULL |
NULL |
NULL |
NULL |
| 12 |
365.9 |
4.6 |
1581.0 |
17.5 |
-0.8754 |
0.1169 |
-0.992 |
-1.841 |
| 13 |
326.1 |
1.9 |
636.2 |
10.4 |
-0.9787 |
-0.7207 |
-0.258 |
-0.479 |
| 14 |
707.5 |
6.6 |
187.2 |
35.9 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2074.2 |
4.1 |
3187.4 |
13.5 |
0.7922 |
0.7645 |
0.028 |
0.051 |
| 16 |
427.4 |
1.6 |
274.7 |
7.1 |
-0.7183 |
-1.4978 |
0.779 |
1.446 |
| 17 |
1857.4 |
1.5 |
3017.3 |
16.7 |
0.6879 |
0.7132 |
-0.025 |
-0.047 |
| 18 |
105.9 |
0.8 |
259.5 |
9.7 |
-2.0543 |
-1.5607 |
-0.494 |
-0.916 |
| 19 |
255.9 |
5.7 |
136.1 |
28.7 |
NULL |
NULL |
NULL |
NULL |
| 20 |
276.4 |
2.4 |
685.2 |
11.4 |
-1.1394 |
-0.6530 |
-0.486 |
-0.902 |
Total number of rows: 4803
Table truncated, full table size 241 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85131_Ch1.imagene.gz |
836.2 Kb |
(ftp)(http) |
IMAGENE |
| GSM85131_Ch2.imagene.gz |
865.1 Kb |
(ftp)(http) |
IMAGENE |
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