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Status |
Public on Feb 01, 2006 |
Title |
RV64.03_CONTROL_day25_Slide51 |
Sample type |
RNA |
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Channel 1 |
Source name |
RV64.03_CONTROL_day25
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Organism |
Rattus norvegicus |
Characteristics |
Strain: Wistar, Sex: male
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Biomaterial provider |
Harlan, Zeist, The Netherlands
|
Extracted molecule |
total RNA |
Extraction protocol |
Polytron - TriZol
|
Label |
Cy5
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Channel 2 |
Source name |
Reference pool
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Organism |
Rattus norvegicus |
Characteristics |
pooled total RNA from interventricular septum tissue
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Extracted molecule |
total RNA |
Extraction protocol |
Polytron - TriZol
|
Label |
Cy3
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Description |
day 25 post saline injection/control
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Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
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Submission date |
Nov 23, 2005 |
Last update date |
Apr 23, 2012 |
Contact name |
Henk Buermans |
E-mail(s) |
h.buermans@lumc.nl
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Phone |
+31715268558
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Organization name |
Leiden University Medical Center
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Department |
Human Genetics
|
Lab |
Leiden Genome Technology Center
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Street address |
Albinusdreef 2
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City |
Leiden |
State/province |
ZH |
ZIP/Postal code |
2300 RC |
Country |
Netherlands |
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Platform ID |
GPL1397 |
Series (1) |
GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
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Data table header descriptions |
ID_REF |
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CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
Data table |
ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
1 |
5176.9 |
0.3 |
10685.1 |
5.7 |
1.7262 |
2.1075 |
-0.381 |
-0.676 |
2 |
255.6 |
1.7 |
341.1 |
6.1 |
-0.4851 |
-0.7454 |
0.260 |
0.461 |
3 |
689.7 |
0.0 |
625.4 |
1.7 |
0.7562 |
0.3367 |
0.419 |
0.744 |
4 |
907.0 |
0.2 |
1045.8 |
5.6 |
0.4486 |
0.1883 |
0.260 |
0.461 |
5 |
595.3 |
0.4 |
388.2 |
3.3 |
0.1394 |
-0.6310 |
0.770 |
1.366 |
6 |
298.4 |
0.7 |
1021.2 |
6.2 |
-0.3685 |
0.1681 |
-0.537 |
-0.951 |
7 |
84.5 |
0.2 |
89.9 |
3.2 |
NULL |
NULL |
NULL |
NULL |
8 |
260.9 |
0.4 |
723.3 |
4.1 |
-0.4665 |
-0.1158 |
-0.351 |
-0.622 |
9 |
1036.5 |
0.8 |
2322.6 |
3.7 |
0.5460 |
0.8490 |
-0.303 |
-0.537 |
10 |
15.8 |
1.1 |
58.9 |
4.4 |
NULL |
NULL |
NULL |
NULL |
11 |
61.9 |
0.3 |
50.7 |
4.8 |
NULL |
NULL |
NULL |
NULL |
12 |
229.1 |
1.3 |
948.2 |
3.8 |
-0.5646 |
0.1086 |
-0.673 |
-1.193 |
13 |
95.6 |
1.6 |
316.9 |
3.2 |
-1.2141 |
-0.7996 |
-0.415 |
-0.735 |
14 |
382.5 |
0.3 |
185.8 |
31.0 |
NULL |
NULL |
NULL |
NULL |
15 |
919.8 |
0.1 |
1438.2 |
3.0 |
0.4589 |
0.4536 |
0.005 |
0.009 |
16 |
129.0 |
1.1 |
129.7 |
3.7 |
-0.9882 |
-1.5509 |
0.563 |
0.998 |
17 |
1401.1 |
15.1 |
1780.9 |
4.3 |
0.7598 |
0.6294 |
0.130 |
0.231 |
18 |
31.5 |
1.2 |
129.2 |
7.7 |
-2.0432 |
-1.5812 |
-0.462 |
-0.819 |
19 |
235.3 |
3.6 |
64.6 |
6.6 |
NULL |
NULL |
NULL |
NULL |
20 |
136.6 |
0.2 |
522.4 |
3.7 |
-0.9414 |
-0.3851 |
-0.556 |
-0.986 |
Total number of rows: 4803
Table truncated, full table size 233 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM85132_Ch1.imagene.gz |
764.3 Kb |
(ftp)(http) |
IMAGENE |
GSM85132_Ch2.imagene.gz |
832.1 Kb |
(ftp)(http) |
IMAGENE |
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