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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV64.05_HYP_day25_Slide49 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV64.05_HYP_day25
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 25 post 30mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
6772.3 |
2.2 |
19048.1 |
100.3 |
1.3819 |
2.0307 |
-0.649 |
-1.216 |
| 2 |
740.5 |
4.4 |
584.2 |
28.6 |
-0.9164 |
-1.2783 |
0.362 |
0.678 |
| 3 |
1172.3 |
2.2 |
1956.9 |
41.7 |
0.2818 |
0.5306 |
-0.249 |
-0.466 |
| 4 |
2255.5 |
1.2 |
2669.4 |
34.9 |
0.2429 |
0.1809 |
0.062 |
0.116 |
| 5 |
1075.1 |
1.1 |
1242.2 |
38.6 |
-0.5252 |
-0.5536 |
0.028 |
0.053 |
| 6 |
1495.2 |
5.5 |
2454.9 |
33.7 |
-0.1862 |
0.1018 |
-0.288 |
-0.539 |
| 7 |
646.8 |
4.4 |
501.8 |
28.2 |
NULL |
NULL |
NULL |
NULL |
| 8 |
959.4 |
5.2 |
1348.2 |
43.0 |
-0.6477 |
-0.4776 |
-0.170 |
-0.319 |
| 9 |
2005.7 |
1.2 |
4633.9 |
47.1 |
0.1213 |
0.7008 |
-0.580 |
-1.086 |
| 10 |
342.4 |
6.7 |
274.4 |
47.7 |
NULL |
NULL |
NULL |
NULL |
| 11 |
348.1 |
3.7 |
290.3 |
48.5 |
NULL |
NULL |
NULL |
NULL |
| 12 |
1661.0 |
4.8 |
2599.3 |
54.8 |
-0.0764 |
0.1483 |
-0.225 |
-0.421 |
| 13 |
546.6 |
3.1 |
914.7 |
35.8 |
-1.2307 |
-0.8483 |
-0.382 |
-0.716 |
| 14 |
1393.4 |
4.5 |
501.6 |
111.1 |
NULL |
NULL |
NULL |
NULL |
| 15 |
3151.8 |
2.1 |
4831.0 |
45.3 |
0.5893 |
0.7406 |
-0.151 |
-0.283 |
| 16 |
635.3 |
1.1 |
482.3 |
41.9 |
-1.0708 |
-1.4961 |
0.425 |
0.797 |
| 17 |
2335.7 |
1.0 |
3490.8 |
50.2 |
0.2792 |
0.4312 |
-0.152 |
-0.285 |
| 18 |
350.1 |
5.4 |
550.7 |
24.2 |
-1.7022 |
-1.3287 |
-0.374 |
-0.700 |
| 19 |
1109.7 |
3.2 |
276.6 |
31.3 |
NULL |
NULL |
NULL |
NULL |
| 20 |
699.0 |
5.4 |
997.3 |
25.1 |
-0.9782 |
-0.7537 |
-0.224 |
-0.420 |
Total number of rows: 4803
Table truncated, full table size 244 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85134_Ch1.imagene.gz |
858.3 Kb |
(ftp)(http) |
IMAGENE |
| GSM85134_Ch2.imagene.gz |
881.1 Kb |
(ftp)(http) |
IMAGENE |
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