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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV64.06_HYP_day25_Slide48 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV64.06_HYP_day25
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 25 post 30mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
h.buermans@lumc.nl
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
5075.9 |
1.8 |
11057.8 |
39.9 |
1.3474 |
1.8006 |
-0.453 |
-0.899 |
| 2 |
541.0 |
0.8 |
444.8 |
27.3 |
-1.0103 |
-1.3606 |
0.350 |
0.695 |
| 3 |
1025.7 |
0.3 |
1499.3 |
25.0 |
0.3938 |
0.5201 |
-0.126 |
-0.251 |
| 4 |
1848.9 |
2.9 |
2307.5 |
44.9 |
0.2831 |
0.2717 |
0.011 |
0.023 |
| 5 |
858.4 |
1.4 |
1059.1 |
34.5 |
-0.5246 |
-0.4935 |
-0.031 |
-0.062 |
| 6 |
1071.6 |
1.6 |
1508.2 |
27.4 |
-0.2910 |
-0.1377 |
-0.153 |
-0.304 |
| 7 |
316.7 |
1.3 |
498.8 |
28.7 |
NULL |
NULL |
NULL |
NULL |
| 8 |
436.7 |
4.1 |
744.3 |
20.7 |
-1.2443 |
-0.8294 |
-0.415 |
-0.823 |
| 9 |
1323.4 |
2.1 |
3137.0 |
32.9 |
-0.0689 |
0.5771 |
-0.646 |
-1.282 |
| 10 |
260.9 |
0.6 |
191.8 |
26.8 |
NULL |
NULL |
NULL |
NULL |
| 11 |
349.1 |
4.9 |
276.4 |
38.4 |
NULL |
NULL |
NULL |
NULL |
| 12 |
1104.6 |
2.4 |
2207.0 |
39.7 |
-0.2598 |
0.2302 |
-0.490 |
-0.972 |
| 13 |
480.0 |
3.7 |
810.0 |
28.8 |
-1.1428 |
-0.7555 |
-0.387 |
-0.768 |
| 14 |
952.5 |
2.1 |
314.3 |
30.2 |
NULL |
NULL |
NULL |
NULL |
| 15 |
3102.6 |
0.8 |
4757.3 |
34.7 |
0.8293 |
0.9824 |
-0.153 |
-0.304 |
| 16 |
419.1 |
1.1 |
517.3 |
26.9 |
-1.2803 |
-1.2051 |
-0.075 |
-0.149 |
| 17 |
2169.8 |
2.1 |
2604.3 |
37.4 |
0.4522 |
0.3936 |
0.059 |
0.116 |
| 18 |
282.2 |
1.9 |
367.1 |
23.4 |
-1.7013 |
-1.5486 |
-0.153 |
-0.303 |
| 19 |
667.8 |
1.0 |
212.9 |
29.9 |
NULL |
NULL |
NULL |
NULL |
| 20 |
493.2 |
2.1 |
668.5 |
24.6 |
-1.1107 |
-0.9421 |
-0.169 |
-0.335 |
Total number of rows: 4803
Table truncated, full table size 243 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85135_Ch1.imagene.gz |
849.6 Kb |
(ftp)(http) |
IMAGENE |
| GSM85135_Ch2.imagene.gz |
877.0 Kb |
(ftp)(http) |
IMAGENE |
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