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Status |
Public on Feb 01, 2006 |
Title |
RV64.11_CHF_day25_Slide46 |
Sample type |
RNA |
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Channel 1 |
Source name |
RV64.11_CHF_day25
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Organism |
Rattus norvegicus |
Characteristics |
Strain: Wistar, Sex: male
|
Biomaterial provider |
Harlan, Zeist, The Netherlands
|
Extracted molecule |
total RNA |
Extraction protocol |
Polytron - TriZol
|
Label |
Cy5
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Channel 2 |
Source name |
Reference pool
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Organism |
Rattus norvegicus |
Characteristics |
pooled total RNA from interventricular septum tissue
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Extracted molecule |
total RNA |
Extraction protocol |
Polytron - TriZol
|
Label |
Cy3
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Description |
day 25 post 80mg monocrotaline/kg bw injection
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Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
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Submission date |
Nov 23, 2005 |
Last update date |
Apr 23, 2012 |
Contact name |
Henk Buermans |
E-mail(s) |
h.buermans@lumc.nl
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Phone |
+31715268558
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Organization name |
Leiden University Medical Center
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Department |
Human Genetics
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Lab |
Leiden Genome Technology Center
|
Street address |
Albinusdreef 2
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City |
Leiden |
State/province |
ZH |
ZIP/Postal code |
2300 RC |
Country |
Netherlands |
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Platform ID |
GPL1397 |
Series (1) |
GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
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Data table header descriptions |
ID_REF |
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CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
Data table |
ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
1 |
6426.8 |
25.0 |
15055.1 |
55.8 |
1.3879 |
2.0327 |
-0.645 |
-1.182 |
2 |
416.1 |
3.9 |
492.7 |
29.5 |
-1.5233 |
-1.3397 |
-0.184 |
-0.337 |
3 |
1903.5 |
7.7 |
2172.0 |
31.2 |
0.5033 |
0.3258 |
0.177 |
0.325 |
4 |
2745.5 |
1.6 |
2416.7 |
32.8 |
0.4887 |
0.2491 |
0.240 |
0.439 |
5 |
1371.7 |
2.9 |
1148.7 |
26.8 |
-0.2494 |
-0.4818 |
0.232 |
0.426 |
6 |
1245.1 |
7.0 |
2051.7 |
36.0 |
-0.3559 |
0.0864 |
-0.442 |
-0.811 |
7 |
429.1 |
1.7 |
523.0 |
29.0 |
NULL |
NULL |
NULL |
NULL |
8 |
1098.6 |
5.1 |
1138.5 |
33.5 |
-0.4878 |
-0.4965 |
0.009 |
0.016 |
9 |
1447.8 |
2.7 |
3382.3 |
38.9 |
-0.1919 |
0.5771 |
-0.769 |
-1.410 |
10 |
387.0 |
6.0 |
252.8 |
37.9 |
NULL |
NULL |
NULL |
NULL |
11 |
889.8 |
3.5 |
406.3 |
30.9 |
NULL |
NULL |
NULL |
NULL |
12 |
2102.9 |
1.9 |
2244.0 |
30.4 |
0.2053 |
0.1772 |
0.028 |
0.052 |
13 |
629.4 |
5.7 |
813.3 |
30.1 |
-1.0837 |
-0.8303 |
-0.253 |
-0.465 |
14 |
667.1 |
2.8 |
460.9 |
34.2 |
NULL |
NULL |
NULL |
NULL |
15 |
3193.4 |
6.3 |
4317.7 |
39.3 |
0.6476 |
0.8163 |
-0.169 |
-0.309 |
16 |
729.4 |
7.2 |
504.5 |
27.7 |
-0.9280 |
-1.3115 |
0.384 |
0.703 |
17 |
2524.2 |
5.5 |
3080.8 |
40.0 |
0.3978 |
0.4851 |
-0.087 |
-0.160 |
18 |
291.8 |
2.1 |
422.0 |
26.9 |
-1.8978 |
-1.4937 |
-0.404 |
-0.741 |
19 |
1051.9 |
5.5 |
242.9 |
31.8 |
NULL |
NULL |
NULL |
NULL |
20 |
413.7 |
1.9 |
794.1 |
32.6 |
-1.5243 |
-0.8576 |
-0.667 |
-1.222 |
Total number of rows: 4803
Table truncated, full table size 245 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM85139_Ch1.imagene.gz |
873.1 Kb |
(ftp)(http) |
IMAGENE |
GSM85139_Ch2.imagene.gz |
880.1 Kb |
(ftp)(http) |
IMAGENE |
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