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Sample GSM86286 Query DataSets for GSM86286
Status Public on Feb 08, 2007
Title CT42 Clock;liver;NONE;C57/BL6x129 mop3 KO;38582
Sample type RNA
 
Source name CT42 Clock;liver;NONE;C57/BL6x129 mop3 KO;38582
Organism Mus musculus
Characteristics CT42 Clock;liver;NONE;C57/BL6x129 mop3 KO;38582
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures except for use of a custom 24-channel fluidics machine
Scan protocol standard Affymetrix procedures
Description circadian liver_ clock and wt_gcrma
Data processing gcRMA
 
Submission date Dec 06, 2005
Last update date Feb 08, 2007
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL1073
Series (2)
GSE3748 Circadian liver_wt and Clock mutants
GSE3751 Circadian rhythm in clock mutants

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
AFFX-18SRNAMur/X00686_3_at 397.979
AFFX-18SRNAMur/X00686_5_at 266.6706
AFFX-18SRNAMur/X00686_M_at 79.84983
AFFX-b-ActinMur/M12481_3_at 102325.8
AFFX-b-ActinMur/M12481_5_at 44770.82
AFFX-b-ActinMur/M12481_M_at 39099.03
AFFX-BioB-3_at 179.7833
AFFX-BioB-5_at 1152.497
AFFX-BioB-M_at 1566.64
AFFX-BioC-3_at 1862.042
AFFX-BioC-5_at 682.1956
AFFX-BioDn-3_at 14399.22
AFFX-BioDn-5_at 4280.837
AFFX-CreX-3_at 160199.6
AFFX-CreX-5_at 138610.1
AFFX-DapX-3_at 73.19758
AFFX-DapX-5_at 108.4416
AFFX-DapX-M_at 101.1618
AFFX-GapdhMur/M32599_3_at 129701.3
AFFX-GapdhMur/M32599_5_at 109467.1

Total number of rows: 31373

Table truncated, full table size 735 Kbytes.




Supplementary file Size Download File type/resource
GSM86286.CEL.gz 5.2 Mb (ftp)(http) CEL

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