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Sample GSM86287 Query DataSets for GSM86287
Status Public on Feb 08, 2007
Title CT42 Clock;liver;NONE;C57/BL6x129 mop3 KO;38583
Sample type RNA
 
Source name CT42 Clock;liver;NONE;C57/BL6x129 mop3 KO;38583
Organism Mus musculus
Characteristics CT42 Clock;liver;NONE;C57/BL6x129 mop3 KO;38583
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures except for use of a custom 24-channel fluidics machine
Scan protocol standard Affymetrix procedures
Description circadian liver_ clock and wt_gcrma
Data processing gcRMA
 
Submission date Dec 06, 2005
Last update date Feb 08, 2007
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL1073
Series (2)
GSE3748 Circadian liver_wt and Clock mutants
GSE3751 Circadian rhythm in clock mutants

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
AFFX-18SRNAMur/X00686_3_at 388.1206
AFFX-18SRNAMur/X00686_5_at 270.839
AFFX-18SRNAMur/X00686_M_at 80.16789
AFFX-b-ActinMur/M12481_3_at 85460.04
AFFX-b-ActinMur/M12481_5_at 30318.33
AFFX-b-ActinMur/M12481_M_at 25889.84
AFFX-BioB-3_at 102.1847
AFFX-BioB-5_at 841.2345
AFFX-BioB-M_at 830.3454
AFFX-BioC-3_at 1130.525
AFFX-BioC-5_at 255.4889
AFFX-BioDn-3_at 7602.728
AFFX-BioDn-5_at 1797.64
AFFX-CreX-3_at 79577.02
AFFX-CreX-5_at 88804.71
AFFX-DapX-3_at 75.09281
AFFX-DapX-5_at 111.4085
AFFX-DapX-M_at 103.442
AFFX-GapdhMur/M32599_3_at 116501.9
AFFX-GapdhMur/M32599_5_at 95408.31

Total number of rows: 31373

Table truncated, full table size 735 Kbytes.




Supplementary file Size Download File type/resource
GSM86287.CEL.gz 5.2 Mb (ftp)(http) CEL

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