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Sample GSM86289 Query DataSets for GSM86289
Status Public on Feb 08, 2007
Title CT46 Clock;liver;NONE;C57/BL6x129 mop3 KO;38585
Sample type RNA
 
Source name CT46 Clock;liver;NONE;C57/BL6x129 mop3 KO;38585
Organism Mus musculus
Characteristics CT46 Clock;liver;NONE;C57/BL6x129 mop3 KO;38585
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures except for use of a custom 24-channel fluidics machine
Scan protocol standard Affymetrix procedures
Description circadian liver_ clock and wt_gcrma
Data processing gcRMA
 
Submission date Dec 06, 2005
Last update date Feb 08, 2007
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL1073
Series (2)
GSE3748 Circadian liver_wt and Clock mutants
GSE3751 Circadian rhythm in clock mutants

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
AFFX-18SRNAMur/X00686_3_at 901.2652
AFFX-18SRNAMur/X00686_5_at 768.9884
AFFX-18SRNAMur/X00686_M_at 81.07913
AFFX-b-ActinMur/M12481_3_at 118190.1
AFFX-b-ActinMur/M12481_5_at 50150.53
AFFX-b-ActinMur/M12481_M_at 43100.88
AFFX-BioB-3_at 99.74
AFFX-BioB-5_at 821.0058
AFFX-BioB-M_at 1119.404
AFFX-BioC-3_at 1261.306
AFFX-BioC-5_at 477.7838
AFFX-BioDn-3_at 8855.312
AFFX-BioDn-5_at 1714.911
AFFX-CreX-3_at 61641.12
AFFX-CreX-5_at 73594.47
AFFX-DapX-3_at 73.76292
AFFX-DapX-5_at 109.3092
AFFX-DapX-M_at 101.9389
AFFX-GapdhMur/M32599_3_at 146271.8
AFFX-GapdhMur/M32599_5_at 121832.2

Total number of rows: 31373

Table truncated, full table size 735 Kbytes.




Supplementary file Size Download File type/resource
GSM86289.CEL.gz 5.2 Mb (ftp)(http) CEL

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