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Sample GSM8787 Query DataSets for GSM8787
Status Public on Aug 04, 2003
Title (-)PE b,pl-Cy3-CA b,pl-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl after removing PE plastic 1 day-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf b,plunder CA plastic -Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For description of the experiment, see Casati and Walbot, Plant Physiology (August 2003)
Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.697336343 -0.520073422 13792 2717 2726 8479 756 785 156 1325 0 0.6973 0.7024 0.6906 0.98 0.6999 0.9551 0.8718 0.6923 0.7179 0.2777 0.3457 0 0.73 0.00E+00 0.6825 0.00E+00
2 0.683339429 -0.549325721 13681 2745 2750 8164 691 736 156 1167 0 0.6833 0.6628 0.6843 0.9805 0.6932 0.9679 0.7885 0.7308 0.7179 0.2637 0.3399 0 0.7728 0.00E+00 0.6897 0.00E+00
3 0.666693019 -0.584905474 15397 2748 2752 9174 741 776 156 1085 0 0.6667 0.6781 0.6625 0.9774 0.672 0.9808 0.9487 0.7115 0.7821 0.2662 0.3355 0 0.8129 0.00E+00 0.7324 0.00E+00
4 0.662790698 -0.593374741 2826 2740 2749 873 816 836 156 1083 0 0.6628 0.6075 -0.08067 -0.1477 8.814 0.5705 0.5064 0 0.1026 0.06265 0.102 1 0.239 2.42E-07 0.09386 1.71E-01
5 -0.214285714 2355 2621 2639 899 842 866 156 1155 0 0 1.388 -0.06645 -0.1023 8.809 0.2308 0.5577 0 0.05769 0.05465 0.1003 1 0.3755 1.25E-17 0.1112 6.21E-02
6 -0.126126126 2448 2559 2583 877 863 880 156 1141 0 0 0.4141 -0.08735 -0.1339 6.723 0.4231 0.5 0.00641 0.05769 0.06081 0.09374 1 0.2838 3.06E-10 0.05751 7.42E-01
7 0.245192308 -2.028014376 3877 2629 2667 1120 814 827 156 1141 0 0.2452 0.3074 0.3563 0.8542 0.3717 0.8718 0.5321 0.3077 0.2885 0.1048 0.1484 1 0.4996 7.62E-31 0.2727 1.74E-09
8 0.270199826 -1.887901348 3810 2659 2700 1072 761 774 156 1081 0 0.2702 0.3289 0.3313 0.8399 0.3455 0.8462 0.6282 0.3397 0.3141 0.1076 0.1432 0 0.4962 3.10E-30 0.3034 1.44E-11
9 0.33481153 -1.578578884 4050 2697 2746 1186 733 749 156 1074 0 0.3348 0.3567 0.3758 0.9026 0.3866 0.8526 0.7051 0.3718 0.4038 0.114 0.1654 0 0.4977 2.21E-30 0.3998 9.29E-20
10 1.251012146 0.323095796 3217 2723 2765 1340 722 730 156 1118 0 1.251 1.212 0.5995 0.4627 1.715 0.891 0.7756 0.03205 0.5449 0.05043 0.159 0 0.5252 5.93E-34 0.5441 2.05E-36
11 1.505474453 0.590218226 3141 2593 2637 1543 718 724 156 1111 0 1.505 1.912 0.7537 0.5218 1.953 0.9359 0.7885 0.04487 0.6731 0.05513 0.1859 0 0.5221 1.58E-33 0.6605 0.00E+00
12 1.138157895 0.186700714 3078 2318 2393 1587 722 731 156 1111 0 1.138 1.31 0.6858 0.6232 1.166 0.9295 0.8077 0.2115 0.6603 0.06427 0.1685 0 0.635 0.00E+00 0.6589 0.00E+00
13 0.749637306 -0.415735344 6823 1998 2057 4354 737 779 156 1111 0 0.7496 0.7711 0.7332 0.9798 0.744 0.9487 0.9231 0.7244 0.7885 0.2084 0.2535 0 0.7255 0.00E+00 0.7763 0.00E+00
14 0.694677871 -0.525583954 6393 1752 1765 3956 732 777 156 1111 0 0.6947 0.7108 0.7072 0.9819 0.7161 0.9744 0.891 0.7051 0.6923 0.2273 0.2876 0 0.7826 0.00E+00 0.659 0.00E+00
15 0.69335225 -0.528339612 6634 1700 1668 4142 721 730 156 1141 0 0.6934 0.6967 0.7101 0.9817 0.7192 1 0.8846 0.7051 0.7051 0.2374 0.2872 0 0.8312 0.00E+00 0.6931 0.00E+00
16 0.541876295 -0.883964559 5155 1776 1739 2526 695 707 156 1141 0 0.5419 0.6352 0.4345 0.8403 0.4649 0.9808 0.7372 0.5897 0.5897 0.2008 0.2315 0 0.6771 0.00E+00 0.5716 3.07E-40
17 0.669191919 -0.579508071 4481 1709 1715 2522 667 673 156 1141 0 0.6692 0.664 0.6751 0.9737 0.6868 0.891 0.8397 0.6218 0.6154 0.1975 0.2591 0 0.6271 0.00E+00 0.6072 2.80E-45
18 0.68301105 -0.550019176 4318 1422 1484 2605 627 638 156 1141 0 0.683 0.6767 0.6884 0.9451 0.7156 0.9231 0.8526 0.6154 0.641 0.2028 0.2442 0 0.5944 1.81E-43 0.6261 0.00E+00
19 0.742327073 -0.42987311 5621 1255 1277 3832 591 602 156 1133 0 0.7423 0.7531 0.7522 0.9863 0.7599 0.9551 0.8782 0.7821 0.7692 0.2565 0.3085 0 0.7987 0.00E+00 0.7586 0.00E+00
20 0.794450431 -0.331970888 4934 1222 1238 3525 576 586 156 1118 0 0.7945 0.7957 0.8034 0.986 0.8125 0.9872 0.8397 0.7308 0.7436 0.2446 0.2982 0 0.7476 0.00E+00 0.7336 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2710 Kbytes.




Supplementary data files not provided
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