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Platform GPL372 Query DataSets for GPL372
Status Public on Aug 04, 2003
Title ZmDB 606-Immature Ear Microarray (2 cm)
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Zea mays
 
Description The 606 Ear Tissue Microarrays are composed of eight subarrays arranged in 4 rows and 2 columns. Each of the 8 subarrays is composed of a 45 x 45 matrix of spots printed at a spacing of 195 um with a 250 um gap between subarrays. Each DNA element on the slide can be located by knowing the Subarray Row and Subarray Column and the Row and Column within the subarray where the element is printed. ESTs can be identified by Stanford Id (number based on the EST project/plate/and platewell where EST is located) and by GenBank Accession Number. Control sequences have sequence names and descriptors in place of Stanford ID and GenBank Accession Number. For more information about the format of the 606 Microarrays visit the information button on the Microarray Elements Search page (http://www.zmdb.iastate.edu/zmdb/microarray/data.html).
 
Submission date Aug 01, 2003
Last update date May 26, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Samples (37) GSM8787, GSM8788, GSM8789, GSM8790, GSM8791, GSM8792 
Series (2)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content
GSE2771 Gene expression non-additivity in immature ears of a heterotic F1 maize hybrid

Data table header descriptions
ID
Subarray Row Number first, second, third or fourth subarray row
Subarray Column Number first or second subarray column
Row Number Within Subarray number of the row in each of the subarrays
Column Number Within Subarray number of the column in each of the subarrays
GB_ACC GenBank Accession Number of the EST
Stanford ID EST ID from Maize Gene Discovery sequencing project
OTHER
SPOT_ID

Data table
ID Subarray Row Number Subarray Column Number Row Number Within Subarray Column Number Within Subarray GB_ACC Stanford ID OTHER SPOT_ID
1 1 1 1 1 Multi-drug resistance protein EST 11 MRP11 Multi-drug resistance protein EST 11
2 1 1 1 2 Multi-drug resistance protein EST 11 MRP11 Multi-drug resistance protein EST 11
3 1 1 1 3 Multi-drug resistance protein EST 11 MRP11 Multi-drug resistance protein EST 11
4 1 1 1 4 GENE MuDR (Mu* sk) vc14 GENE MuDR (Mu* sk)
5 1 1 1 5 GENE MuDR (Mu* sk) vc14 GENE MuDR (Mu* sk)
6 1 1 1 6 GENE MuDR (Mu* sk) vc14 GENE MuDR (Mu* sk)
7 1 1 1 7 Kin gene cDNA (87 EcoR1-Xholl) KIN Kin gene cDNA (87 EcoR1-Xholl)
8 1 1 1 8 Kin gene cDNA (87 EcoR1-Xholl) KIN Kin gene cDNA (87 EcoR1-Xholl)
9 1 1 1 9 Kin gene cDNA (87 EcoR1-Xholl) KIN Kin gene cDNA (87 EcoR1-Xholl)
10 1 1 1 10 Tubulin Alpha 1/2 chain 605032H06 Tubulin Alpha 1/2 chain
11 1 1 1 11 Tubulin Alpha 1/2 chain 605032H06 Tubulin Alpha 1/2 chain
12 1 1 1 12 Tubulin Alpha 1/2 chain 605032H06 Tubulin Alpha 1/2 chain
13 1 1 1 13 Photosystem II 10 KD polypeptide precursor 707010E07 Photosystem II 10 KD polypeptide precursor
14 1 1 1 14 Photosystem II 10 KD polypeptide precursor 707010E07 Photosystem II 10 KD polypeptide precursor
15 1 1 1 15 Photosystem II 10 KD polypeptide precursor 707010E07 Photosystem II 10 KD polypeptide precursor
16 1 1 1 16 GENE ubiquitin2 (skuqbgii cDNA) vc9 GENE ubiquitin2 (skuqbgii cDNA)
17 1 1 1 17 GENE ubiquitin2 (skuqbgii cDNA) vc9 GENE ubiquitin2 (skuqbgii cDNA)
18 1 1 1 18 GENE ubiquitin2 (skuqbgii cDNA) vc9 GENE ubiquitin2 (skuqbgii cDNA)
19 1 1 1 19 Multi-drug resistance protein 29 3?TR MRP29 Multi-drug resistance protein 29 3?TR
20 1 1 1 20 Multi-drug resistance protein 29 3?TR MRP29 Multi-drug resistance protein 29 3?TR

Total number of rows: 16200

Table truncated, full table size 590 Kbytes.






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