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Sample GSM8791 Query DataSets for GSM8791
Status Public on Aug 04, 2003
Title CA b,pl-Cy3-(-)PEB,PL-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf B,PL one day after removing the PE plastic-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.729887652 -0.45425368 27958 477 860 38235 584 1212 156 1260 0 1.37 1.38 1.362 0.9957 1.37 1 1 0.9359 0.9808 0.2605 0.2545 0 0.853 0.00E+00 0.8618 0.00E+00
2 0.729694323 -0.454635865 28919 512 1157 39556 626 1681 156 1112 0 1.37 1.355 1.357 0.9923 1.371 1 1 0.9551 0.9744 0.2403 0.2263 0 0.8998 0.00E+00 0.89 0.00E+00
3 0.740195784 -0.434021176 37445 470 822 50531 578 1087 156 1170 0 1.351 1.336 1.308 0.9925 1.321 1 1 1 1 0.2415 0.2208 0 0.9615 0.00E+00 0.9679 0.00E+00
4 0.957627119 -0.062464087 1104 426 538 1221 513 647 156 1165 0 1.044 1.103 1.09 0.98 1.115 0.7628 0.7051 0.4615 0.4231 0.1474 0.1505 0 0.3834 2.20E-18 0.3571 5.29E-16
5 0.928435115 -0.107127007 1383 410 465 1542 494 545 156 1111 0 1.077 1.108 1.048 0.9852 1.065 0.9103 0.8654 0.5449 0.5 0.1839 0.1894 0 0.5295 1.78E-34 0.5106 4.29E-32
6 0.912295787 -0.132426441 1474 413 457 1659 496 549 156 1111 0 1.096 1.122 1.081 0.9839 1.1 0.8782 0.8333 0.4679 0.4679 0.1722 0.1704 0 0.4505 4.43E-25 0.4938 4.80E-30
7 0.375857339 -1.411742921 969 421 465 1962 504 603 156 1111 0 2.661 2.68 2.56 0.9883 2.613 0.6731 0.6282 0.2564 0.3397 0.1429 0.2028 0 0.2541 2.88E-08 0.2975 3.53E-11
8 0.371609403 -1.428141087 850 439 486 1627 521 637 156 1111 0 2.691 2.548 2.428 0.9911 2.466 0.6026 0.7244 0.2115 0.2628 0.1233 0.1578 0 0.1815 2.00E-04 0.2739 1.54E-09
9 0.366666667 -1.447458977 864 468 805 1625 545 921 156 1141 0 2.727 2.698 1.475 0.8914 1.749 0.6731 0.7115 0.2179 0.3077 0.1315 0.1719 0 0.1921 6.34E-05 0.2521 3.59E-08
10 0.901798343 -0.149123236 4967 504 1097 5532 583 1197 156 1141 0 1.109 1.093 1.102 0.9962 1.107 0.9679 0.9487 0.8269 0.7949 0.1958 0.1999 0 0.7205 0.00E+00 0.6855 0.00E+00
11 0.915395284 -0.127533235 5160 540 1142 5678 631 1258 156 1141 0 1.092 1.079 1.077 0.9939 1.084 0.9936 1 0.9295 0.9103 0.1966 0.1967 0 0.8114 0.00E+00 0.7877 0.00E+00
12 0.895953757 -0.158503822 5068 573 1015 5690 673 1270 156 1097 0 1.116 1.118 1.142 0.9742 1.177 1 1 0.9231 0.9295 0.1853 0.1845 0 0.8349 0.00E+00 0.8157 0.00E+00
13 0.441828001 -1.178443241 19903 596 830 44438 740 1330 156 1094 0 2.263 2.315 2.222 0.9874 2.269 0.9872 1 0.8974 0.9615 0.2722 0.2676 0 0.8114 0.00E+00 0.805 0.00E+00
14 0.427928578 -1.224558065 18398 615 854 42334 778 1433 156 1142 0 2.337 2.339 2.297 0.9909 2.333 1 0.9936 0.9615 0.9808 0.2993 0.2983 0 0.8429 0.00E+00 0.8505 0.00E+00
15 0.432754831 -1.20837817 19510 609 722 44416 740 1058 156 1222 0 2.311 2.316 2.277 0.992 2.308 0.9936 1 0.9744 0.9936 0.2918 0.2944 0 0.8951 0.00E+00 0.9049 0.00E+00
16 1.196121212 0.258363596 10486 618 910 8939 689 984 156 1263 0 0.836 0.8376 0.8241 0.9856 0.834 0.9679 0.8782 0.7244 0.6731 0.3606 0.3457 0 0.6404 0.00E+00 0.5396 2.60E-36
17 1.185246644 0.245187308 8506 649 1205 7320 691 1150 156 1177 0 0.8437 0.829 0.8237 0.9892 0.831 0.9615 0.9038 0.6859 0.6282 0.3451 0.3408 0 0.6025 8.41E-45 0.523 7.07E-34
18 1.189297501 0.250109648 10790 700 1608 9218 734 1479 156 1128 0 0.8408 0.8483 0.8314 0.9931 0.8361 0.9872 0.9744 0.7949 0.7308 0.3475 0.3347 0 0.6562 0.00E+00 0.6211 0.00E+00
19 1.124455161 0.169226133 12821 696 1292 11522 739 1255 156 1061 0 0.8893 0.8957 0.8478 0.9885 0.8561 0.9744 0.9808 0.9167 0.9231 0.2424 0.2117 0 0.8288 0.00E+00 0.8318 0.00E+00
20 1.093956103 0.129554849 10799 681 1140 9969 720 1140 156 1111 0 0.9141 0.9054 0.871 0.986 0.8818 0.9936 0.9936 0.891 0.9103 0.2368 0.2027 0 0.799 0.00E+00 0.796 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2772 Kbytes.




Supplementary data files not provided
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