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Sample GSM8794 Query DataSets for GSM8794
Status Public on Aug 04, 2003
Title CA b,pl-Cy3-CA mutator-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf mutator under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 1.230338128 0.299054859 13379 207 266 10842 136 187 156 1287 0 0.8128 0.9147 0.6169 0.8525 0.6859 1 1 0.9872 1 0.3326 0.3045 0 0.9244 0.00E+00 0.9594 0.00E+00
2 1.12754747 0.173188172 11553 211 289 10204 145 261 156 1163 0 0.8869 0.8332 0.747 0.9059 0.8085 0.9872 1 0.9679 1 0.3371 0.2974 0 0.898 0.00E+00 0.9232 0.00E+00
3 1.18401893 0.243692147 13231 221 307 11132 144 243 156 1163 0 0.8446 0.7632 0.6862 0.8835 0.7519 0.9679 1 0.9487 0.9872 0.3417 0.3001 0 0.8676 0.00E+00 0.9404 0.00E+00
4 0.381453469 -1.390421011 1383 223 274 3185 144 175 156 1111 0 2.622 2.678 2.141 0.8839 2.65 0.9231 0.9231 0.7885 0.859 0.2069 0.2624 0 0.7011 0.00E+00 0.809 0.00E+00
5 0.344224422 -1.538578636 1268 225 274 3176 146 259 156 1053 0 2.905 2.864 2.418 0.9057 2.882 0.859 0.9551 0.7244 0.891 0.2375 0.3002 0 0.6432 0.00E+00 0.8018 0.00E+00
6 0.2889672 -1.791022351 1288 222 307 3834 145 271 156 1026 0 3.461 3.545 2.676 0.8922 3.292 0.9231 0.9808 0.7051 0.9551 0.1937 0.2372 0 0.613 1.40E-45 0.8737 0.00E+00
7 0.716593245 -0.48077365 1187 211 264 1501 139 176 156 1029 0 1.395 1.452 1.207 0.9309 1.321 0.7692 0.8141 0.5321 0.6282 0.2111 0.2708 0 0.46 7.09E-26 0.5481 1.44E-36
8 0.798363095 -0.324883062 1286 213 232 1483 139 148 156 1059 0 1.253 1.243 1.176 0.9535 1.246 0.9295 0.8782 0.6795 0.6923 0.2637 0.3245 0 0.644 0.00E+00 0.671 0.00E+00
9 0.823357664 -0.280408825 1349 221 394 1514 144 253 156 1059 0 1.215 1.26 1.026 0.9174 1.129 0.8782 0.9167 0.6282 0.7244 0.2885 0.3466 0 0.5484 9.84E-37 0.6454 0.00E+00
10 1.043111528 0.060893417 2461 235 540 2289 155 350 156 1034 0 0.9587 0.9727 0.7755 0.9122 0.8371 0.9615 0.9872 0.9038 0.9423 0.2267 0.2264 0 0.7316 0.00E+00 0.7754 0.00E+00
11 1.139388489 0.188259736 2776 242 541 2388 164 375 156 1033 0 0.8777 0.9286 0.7244 0.9275 0.7664 0.9679 1 0.8526 0.9679 0.2152 0.2206 0 0.6776 0.00E+00 0.7518 0.00E+00
12 1.058286211 0.081729854 2680 247 500 2472 173 410 156 1009 0 0.9449 0.9484 0.8039 0.9092 0.8734 0.9615 0.9936 0.8846 0.9295 0.2014 0.2 0 0.7241 0.00E+00 0.7383 0.00E+00
13 0.686459798 -0.542752863 21238 244 526 30757 174 519 156 1075 0 1.457 1.491 1.343 0.9438 1.452 1 1 0.9744 1 0.3081 0.3123 0 0.89 0.00E+00 0.8877 0.00E+00
14 0.676325793 -0.56420972 21949 243 537 32266 172 643 156 1099 0 1.479 1.524 1.36 0.9541 1.449 0.9936 1 0.9679 1 0.2917 0.2973 0 0.8687 0.00E+00 0.8629 0.00E+00
15 0.704078417 -0.506191977 22574 235 412 31890 162 621 156 1106 0 1.42 1.415 1.358 0.9506 1.455 0.9936 1 0.9551 0.9872 0.3256 0.32 0 0.8609 0.00E+00 0.8333 0.00E+00
16 0.762470309 -0.391246936 4723 229 323 6048 154 438 156 1120 0 1.312 1.334 1.279 0.9414 1.384 0.9872 1 0.9359 0.9615 0.2899 0.2995 0 0.8818 0.00E+00 0.8353 0.00E+00
17 0.77305094 -0.371364611 4456 222 252 5636 159 238 156 1133 0 1.294 1.281 1.224 0.9551 1.297 0.9808 0.9872 0.9231 0.9615 0.2919 0.2927 0 0.8696 0.00E+00 0.8503 0.00E+00
18 0.800705795 -0.320655847 4537 226 359 5552 168 306 156 1147 0 1.249 1.27 1.137 0.9371 1.229 0.9551 0.9615 0.9038 0.9038 0.2759 0.2737 0 0.8253 0.00E+00 0.7816 0.00E+00
19 2.32354798 1.216329436 7602 241 448 3350 182 381 156 1091 0 0.4304 0.523 0.3099 0.8839 0.3177 0.9487 0.9359 0.8397 0.859 0.3857 0.2943 0 0.7536 0.00E+00 0.7298 0.00E+00
20 2.258795075 1.175553391 10514 241 444 4728 180 402 156 1077 0 0.4427 0.443 0.4175 0.9326 0.4269 1 0.9936 0.9423 0.9295 0.2473 0.2149 0 0.8805 0.00E+00 0.8179 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2718 Kbytes.




Supplementary data files not provided
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