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Sample GSM8795 Query DataSets for GSM8795
Status Public on Aug 04, 2003
Title CA b,pl-Cy3-LE b,pl-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf b,pl under LE plastic-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 1.138219503 0.186778805 18459 227 291 16308 290 378 156 1274 0 0.8786 0.8937 0.8048 0.954 0.8368 0.9615 0.9872 0.9551 0.9359 0.3766 0.3422 0 0.8413 0.00E+00 0.8243 0.00E+00
2 1.064162067 0.089717884 17193 226 303 16230 286 395 156 1155 0 0.9397 0.9641 0.8654 0.9559 0.9012 0.9936 0.9872 0.9615 0.9551 0.3889 0.3626 0 0.8164 0.00E+00 0.8135 0.00E+00
3 1.068422083 0.0954817 22049 219 276 20703 271 357 156 1127 0 0.936 0.9651 0.8685 0.955 0.9054 0.9679 0.9808 0.9295 0.9551 0.4014 0.3938 0 0.8404 0.00E+00 0.8369 0.00E+00
4 1.853795689 0.89048225 2191 213 247 1322 255 315 156 1193 0 0.5394 0.5533 0.5191 0.9365 0.5349 0.859 0.7628 0.641 0.6282 0.3242 0.2819 0 0.5445 9.62E-37 0.4946 2.19E-30
5 1.841927303 0.881216123 2392 213 234 1438 255 303 156 1185 0 0.5429 0.5793 0.5162 0.9412 0.5305 0.9103 0.8013 0.6795 0.641 0.3463 0.3122 0 0.5809 1.00E-41 0.5163 4.71E-33
6 1.777777778 0.830074999 2040 216 262 1275 249 322 156 1171 0 0.5625 0.5872 0.5491 0.939 0.5666 0.8205 0.7821 0.6474 0.5833 0.3513 0.329 0 0.5356 1.75E-35 0.4825 7.01E-29
7 1.069633884 0.097117073 1706 216 264 1633 240 315 156 1176 0 0.9349 0.9498 0.8531 0.9449 0.8974 0.7372 0.7756 0.5449 0.6218 0.281 0.2714 0 0.4405 3.77E-24 0.4538 1.31E-25
8 1.118135377 0.161094871 1969 218 245 1810 244 296 156 1113 0 0.8943 1.002 0.8499 0.9482 0.891 0.8397 0.8526 0.5962 0.6474 0.3208 0.3092 0 0.5106 4.24E-32 0.4731 1.30E-27
9 0.996128319 -0.005596497 2018 217 247 2059 251 302 156 1099 0 1.004 1.019 0.8988 0.9329 0.9608 0.8462 0.8205 0.6603 0.6731 0.3428 0.3494 0 0.5487 6.04E-37 0.5154 1.20E-32
10 0.944977074 -0.081648767 4755 221 263 5056 258 319 156 1072 0 1.058 1.098 1.031 0.9683 1.067 0.9872 0.9808 0.9423 0.9487 0.3605 0.348 0 0.8186 0.00E+00 0.8089 0.00E+00
11 0.92 -0.120294234 4207 228 285 4594 269 351 156 1088 0 1.087 1.115 1.047 0.9746 1.076 0.9487 0.9167 0.8269 0.8526 0.3286 0.3207 0 0.6837 0.00E+00 0.6782 0.00E+00
12 0.930144605 -0.104473072 4410 229 284 4767 272 368 156 1073 0 1.075 1.11 1.043 0.9701 1.077 0.9615 0.9231 0.8462 0.8269 0.3476 0.3352 0 0.698 0.00E+00 0.6691 0.00E+00
13 0.824894179 -0.277719039 26145 226 280 31692 271 363 156 1098 0 1.212 1.22 1.136 0.9762 1.169 0.9872 0.9808 0.9551 0.9679 0.4392 0.4241 0 0.9213 0.00E+00 0.9141 0.00E+00
14 0.85263329 -0.23000271 26455 228 299 31018 258 355 156 1117 0 1.173 1.227 1.129 0.9804 1.155 0.9936 0.9744 0.9679 0.9615 0.4103 0.4063 0 0.9092 0.00E+00 0.9138 0.00E+00
15 0.870744435 -0.199678747 24760 232 333 28422 253 355 156 1109 0 1.148 1.228 1.086 0.9709 1.122 0.9487 0.9872 0.891 0.9423 0.4121 0.423 0 0.8385 0.00E+00 0.8575 0.00E+00
16 1.240795485 0.311265342 9471 237 312 7692 250 327 156 1086 0 0.8059 0.8198 0.7681 0.9789 0.7807 0.9615 0.9487 0.8526 0.8718 0.3659 0.3674 0 0.7329 0.00E+00 0.7227 0.00E+00
17 1.276468067 0.352157447 9163 229 283 7240 241 300 156 1113 0 0.7834 0.7857 0.7782 0.9819 0.7892 0.9551 0.9808 0.9231 0.8974 0.4181 0.4008 0 0.848 0.00E+00 0.8036 0.00E+00
18 1.212037618 0.277434476 9893 227 295 8224 249 334 156 1147 0 0.8251 0.858 0.8114 0.9808 0.8242 0.9679 0.9615 0.9359 0.9103 0.3905 0.3846 0 0.7952 0.00E+00 0.7411 0.00E+00
19 1.487185056 0.572584179 7072 225 274 4868 264 350 156 1091 0 0.6724 0.7137 0.5816 0.955 0.596 0.9487 0.9295 0.8397 0.8013 0.4285 0.3836 0 0.7078 0.00E+00 0.6574 0.00E+00
20 1.501890149 0.586779295 6982 228 281 4773 276 379 156 1135 0 0.6658 0.7259 0.5804 0.9627 0.5921 0.9487 0.9359 0.8654 0.8397 0.4019 0.3355 0 0.741 0.00E+00 0.6826 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2766 Kbytes.




Supplementary data files not provided
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