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Sample GSM8796 Query DataSets for GSM8796
Status Public on Aug 04, 2003
Title CA b,pl-Cy3-PE B,PL-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf B,PL under PE plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.994285714 -0.008267616 3250 292 435 3179 204 314 156 1236 0 1.006 1.105 0.4164 0.6927 0.4933 0.9423 0.9551 0.891 0.9038 0.3015 0.3204 0 0.728 0.00E+00 0.7724 0.00E+00
2 0.861141805 -0.215677268 2630 292 460 2922 207 353 156 1110 0 1.161 1.058 1.192 0.9528 1.265 1 0.9936 0.9295 0.9359 0.2569 0.2923 0 0.7026 0.00E+00 0.7098 0.00E+00
3 0.841816758 -0.248421865 3491 266 385 4013 182 288 156 1053 0 1.188 1.163 1.232 0.9687 1.282 1 1 0.9808 0.9872 0.2644 0.2929 0 0.8086 0.00E+00 0.8205 0.00E+00
4 1.087301587 0.120752159 352 215 278 269 143 185 156 1113 0 0.9197 0.9499 0.6104 0.8615 0.6721 0.5513 0.6218 0.3397 0.4103 0.2508 0.2323 0 0.1957 4.43E-05 0.2353 3.73E-07
5 0.969072165 -0.045323991 280 186 221 229 132 146 156 1141 0 1.032 0.9503 0.5176 0.7634 0.6061 0.8205 0.8141 0.3782 0.4808 0.1309 0.15 0 0.4055 1.84E-20 0.4438 2.01E-24
6 0.916666667 -0.125530882 256 201 260 202 142 175 156 1141 0 1.091 0.9412 0.5784 0.9192 0.6059 0.6538 0.6987 0.3077 0.3333 0.1302 0.1363 0 0.1992 2.93E-05 0.248 6.39E-08
7 1.103658537 0.142293882 388 207 273 311 147 185 156 1141 0 0.9061 0.8542 0.6748 0.9261 0.7111 0.7628 0.8333 0.4231 0.4423 0.1607 0.1785 0 0.36 3.20E-16 0.4001 6.27E-20
8 1.18125 0.240314329 388 199 260 306 146 186 156 1134 0 0.8466 0.8438 0.7279 0.9229 0.7736 0.7628 0.6731 0.391 0.391 0.1612 0.1872 0 0.3187 8.62E-13 0.2577 1.64E-08
9 1.617647059 0.693896872 649 209 307 424 152 228 156 1111 0 0.6182 0.8844 0.124 0.4318 0.1327 0.9295 0.9103 0.6667 0.6923 0.2209 0.2161 0 0.5111 3.74E-32 0.5146 1.37E-32
10 1.204081633 0.267933205 1691 216 314 1380 155 233 156 1111 0 0.8305 0.8145 0.8161 0.9604 0.8441 0.9808 0.9679 0.891 0.8846 0.239 0.2555 0 0.6831 0.00E+00 0.6673 0.00E+00
11 1.195461201 0.257567307 1863 230 320 1531 165 235 156 1111 0 0.8365 0.8388 0.8087 0.9578 0.8381 1 1 0.9872 0.9679 0.2252 0.2349 0 0.8005 0.00E+00 0.7732 0.00E+00
12 1.202988792 0.266623201 2230 298 824 1813 207 651 156 1111 0 0.8313 0.8321 0.8145 0.9465 0.8534 1 0.9936 0.9936 0.9808 0.167 0.1909 0 0.7124 0.00E+00 0.6431 0.00E+00
13 0.902673645 -0.147723608 13094 332 1264 14377 239 1002 156 1106 0 1.108 1.096 1.136 0.976 1.168 1 1 1 1 0.2329 0.261 0 0.7969 0.00E+00 0.8122 0.00E+00
14 0.886232084 -0.174243538 13193 332 1129 14747 235 925 156 1083 0 1.128 1.139 1.145 0.9757 1.178 1 1 1 1 0.2581 0.2755 0 0.8054 0.00E+00 0.8293 0.00E+00
15 0.890508354 -0.167298949 12799 274 679 14282 217 564 156 1139 0 1.123 1.122 1.134 0.9771 1.165 1 1 1 1 0.299 0.3024 0 0.8452 0.00E+00 0.8388 0.00E+00
16 1.114252061 0.15607563 1227 281 490 1070 221 350 156 1139 0 0.8975 1.063 0.5882 0.8903 0.6298 0.9744 0.9679 0.8397 0.8654 0.2086 0.2112 0 0.6397 0.00E+00 0.695 0.00E+00
17 0.829457364 -0.269760269 844 309 516 887 242 362 156 1111 0 1.206 1.211 0.6872 0.8654 0.7668 0.9103 0.9872 0.7244 0.7628 0.1643 0.181 0 0.5124 2.58E-32 0.5862 3.71E-42
18 0.873164219 -0.195675083 957 303 406 980 231 299 156 1125 0 1.145 1.146 0.9379 0.9163 1.026 0.9936 0.9872 0.7692 0.859 0.1477 0.1613 0 0.6125 0.00E+00 0.6581 0.00E+00
19 1.181697108 0.240860292 6515 304 437 5487 231 320 156 1111 0 0.8462 0.8661 0.8034 0.968 0.8249 1 1 0.9103 0.9615 0.3526 0.3732 0 0.6886 0.00E+00 0.7521 0.00E+00
20 1.217086835 0.283432103 9040 350 508 7400 260 377 156 1120 0 0.8216 0.8177 0.7948 0.9691 0.815 1 1 0.9936 1 0.3804 0.3837 0 0.8413 0.00E+00 0.88 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2695 Kbytes.




Supplementary data files not provided
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