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Sample GSM8798 Query DataSets for GSM8798
Status Public on Aug 04, 2003
Title CA b,pl-Cy3-UV-B bz2-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf bz2 in the greenhouse after 8h of UV-B supplementation-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 1.414725506 0.50052216 36647 389 926 25966 337 668 156 1265 0 0.7069 0.6971 0.6817 0.9797 0.6908 1 1 0.9808 0.9872 0.3452 0.332 0 0.8633 0.00E+00 0.8893 0.00E+00
2 1.621145868 0.697013908 43773 396 1079 27110 353 779 156 1085 0 0.6168 0.5948 0.5804 0.9769 0.5875 0.9936 1 0.9615 0.9872 0.2524 0.2336 0 0.8761 0.00E+00 0.9145 0.00E+00
3 1.576204523 0.656454746 48467 377 551 30852 342 481 156 1083 0 0.6344 0.6252 0.6147 0.9754 0.6234 1 1 1 1 0.2586 0.2472 0 0.9624 0.00E+00 0.9695 0.00E+00
4 0.53185862 -0.910885299 2552 340 369 4468 309 328 156 1111 0 1.88 1.811 1.905 0.9621 2.027 0.9167 0.9231 0.7244 0.7821 0.2994 0.3529 0 0.7026 0.00E+00 0.7301 0.00E+00
5 0.571634893 -0.806834112 2291 312 320 3750 288 293 156 1111 0 1.749 1.695 1.794 0.9644 1.899 0.9295 0.9359 0.7051 0.7115 0.3038 0.3472 0 0.697 0.00E+00 0.6879 0.00E+00
6 0.531122746 -0.912882779 2129 303 312 3724 286 293 156 1111 0 1.883 1.731 1.96 0.9641 2.079 0.9487 0.9615 0.7821 0.8782 0.3379 0.3835 0 0.7776 0.00E+00 0.8404 0.00E+00
7 0.051508585 -4.279043288 919 301 314 12286 288 303 156 1111 0 19.41 18.81 17.64 0.9715 18.69 0.7628 0.9744 0.4295 0.8205 0.2267 0.4536 0 0.3801 5.70E-18 0.7663 0.00E+00
8 0.048356236 -4.370154243 858 302 311 11785 287 302 156 1111 0 20.68 18.5 17.84 0.955 19.55 0.8077 0.9487 0.4231 0.7628 0.232 0.4568 0 0.4755 6.87E-28 0.7202 0.00E+00
9 0.05136897 -4.282959043 894 303 442 11791 286 403 156 1111 0 19.47 18.96 9.598 0.7305 17.94 0.75 0.9744 0.4295 0.8269 0.232 0.4746 0 0.4454 1.62E-24 0.7654 0.00E+00
10 0.925424457 -0.111812868 8921 309 494 9599 293 456 156 1111 0 1.081 1.093 1.047 0.9839 1.065 0.9936 1 0.9744 0.9936 0.2107 0.2045 0 0.8983 0.00E+00 0.9358 0.00E+00
11 0.925901923 -0.111068713 8884 312 430 9555 297 425 156 1111 0 1.08 1.091 1.059 0.9814 1.081 1 0.9936 0.9808 0.9936 0.264 0.2675 0 0.8947 0.00E+00 0.9166 0.00E+00
12 0.936050517 -0.095341704 8472 319 557 9021 311 641 156 1139 0 1.068 1.071 1.044 0.9582 1.094 1 1 1 1 0.2445 0.2514 0 0.877 0.00E+00 0.8737 0.00E+00
13 0.631388539 -0.663400022 31920 331 721 50359 328 1092 156 1139 0 1.584 1.601 1.519 0.9724 1.581 1 1 1 1 0.2585 0.2351 0 0.9103 0.00E+00 0.9248 0.00E+00
14 0.661458445 -0.59627757 31154 377 828 46916 387 1512 156 1085 0 1.512 1.561 1.458 0.9759 1.508 1 1 1 1 0.2754 0.2582 0 0.8552 0.00E+00 0.8614 0.00E+00
15 0.644209289 -0.634398632 33236 362 626 51420 390 1115 156 1139 0 1.552 1.585 1.513 0.984 1.548 0.9936 1 0.9808 0.9872 0.2613 0.2373 0 0.8953 0.00E+00 0.9013 0.00E+00
16 1.104947999 0.143978475 14348 324 724 13017 325 746 156 1254 0 0.905 0.8856 0.8844 0.9667 0.9121 1 0.9808 0.9487 0.891 0.3736 0.3713 0 0.8146 0.00E+00 0.7258 0.00E+00
17 1.115154065 0.15724304 10924 320 1408 9806 297 1305 156 1152 0 0.8967 0.9058 0.8605 0.9647 0.8883 0.9423 0.9038 0.7949 0.7949 0.3928 0.3944 0 0.6093 1.40E-45 0.5978 5.05E-44
18 1.14148589 0.190913026 12252 360 3086 10751 333 2796 156 1031 0 0.8761 0.9213 0.86 0.9717 0.8819 0.9551 0.9103 0.8141 0.7692 0.3598 0.3639 0 0.52 5.82E-33 0.485 9.84E-29
19 0.886153125 -0.174372081 7937 379 2855 8891 362 2598 156 1083 0 1.128 1.134 0.955 0.9625 0.9919 0.9872 0.9679 0.9359 0.9551 0.2333 0.2152 0 0.747 0.00E+00 0.7734 0.00E+00
20 0.825959878 -0.275856393 6539 322 721 7829 302 712 156 1111 0 1.211 1.21 1.129 0.9645 1.177 0.9936 1 0.9615 0.9744 0.2071 0.2021 0 0.874 0.00E+00 0.8857 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2766 Kbytes.




Supplementary data files not provided
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