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Sample GSM8801 Query DataSets for GSM8801
Status Public on Aug 04, 2003
Title CA bz2-Cy3- PE bz2-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf bz2 under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf bz2 under PE plastic-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 1.020373514 0.029097357 30711 661 1134 29803 353 744 156 1273 0 0.98 0.9797 0.9676 0.9854 0.9817 0.9936 1 0.9615 0.9872 0.2507 0.2559 0 0.9254 0.00E+00 0.9262 0.00E+00
2 1.048911917 0.068893532 31049 683 1187 29321 371 786 156 1148 0 0.9534 0.9453 0.938 0.9921 0.9451 1 1 1 1 0.254 0.2529 0 0.9466 0.00E+00 0.9512 0.00E+00
3 1.03274402 0.046482707 35423 666 765 34016 361 429 156 1141 0 0.9683 0.9805 0.9709 0.9893 0.9812 1 1 1 1 0.3185 0.3291 0 0.9588 0.00E+00 0.9609 0.00E+00
4 1.062002653 0.08678737 3863 660 689 3371 355 378 156 1149 0 0.9416 0.9286 0.9478 0.9864 0.9603 0.9487 0.9295 0.8141 0.8141 0.2618 0.3075 0 0.7828 0.00E+00 0.762 0.00E+00
5 1.081930772 0.11360819 4069 662 676 3517 368 387 156 1097 0 0.9243 0.9177 0.9177 0.9879 0.9281 0.9615 0.9551 0.8269 0.8526 0.2748 0.3158 0 0.8114 0.00E+00 0.805 0.00E+00
6 1.105263158 0.144389909 4628 659 703 3967 376 399 156 983 0 0.9048 0.9323 0.7218 0.8743 0.8035 0.9872 0.9808 0.8462 0.8526 0.2887 0.3186 0 0.8301 0.00E+00 0.7882 0.00E+00
7 0.311660007 -1.681955057 2362 646 704 5891 385 442 156 991 0 3.209 3.228 2.819 0.9066 3.372 0.8526 0.9103 0.5577 0.7115 0.2174 0.3259 0 0.5947 9.42E-43 0.6436 0.00E+00
8 0.30474732 -1.714314561 2231 639 663 5618 394 455 156 1125 0 3.281 3.117 3.283 0.9895 3.347 0.8462 0.8654 0.5385 0.6923 0.2173 0.3241 0 0.5487 4.73E-37 0.6141 0.00E+00
9 0.286814762 -1.801808817 2256 655 686 5996 414 470 156 1109 0 3.487 3.29 3.399 0.9876 3.478 0.8269 0.891 0.5064 0.7308 0.2351 0.3595 0 0.532 8.47E-35 0.6255 0.00E+00
10 0.681493685 -0.553227807 6932 727 908 9578 473 713 156 1033 0 1.467 1.452 1.464 0.9883 1.488 0.9936 0.9872 0.9744 0.9808 0.2043 0.2339 0 0.9125 0.00E+00 0.9112 0.00E+00
11 0.676761304 -0.563281015 7236 800 1092 10050 540 916 156 1059 0 1.478 1.46 1.479 0.9879 1.505 1 1 0.9872 0.9936 0.1722 0.2082 0 0.8883 0.00E+00 0.9028 0.00E+00
12 0.654932883 -0.610581027 7784 807 1152 11215 562 1318 156 1024 0 1.527 1.52 1.518 0.9508 1.633 1 1 1 0.9936 0.1747 0.2164 0 0.8745 0.00E+00 0.8587 0.00E+00
13 0.866979376 -0.205930421 49273 847 1455 56499 643 1727 156 1014 0 1.153 1.074 1.046 0.9721 1.079 1 1 1 1 0.2264 0.1638 0 0.9581 0.00E+00 0.9438 0.00E+00
14 0.861964089 -0.214300329 47979 933 1863 55315 735 2186 156 1080 0 1.16 1.084 1.045 0.9718 1.077 1 1 1 1 0.237 0.1709 0 0.8827 0.00E+00 0.9385 0.00E+00
15 0.864110662 -0.210712013 47800 1011 2162 54955 808 2703 156 1122 0 1.157 1.083 1.038 0.9708 1.071 1 1 1 1 0.2516 0.1769 0 0.8862 0.00E+00 0.9424 0.00E+00
16 0.896695332 -0.157310207 17416 837 1595 19146 657 1764 156 1084 0 1.115 1.111 1.105 0.985 1.124 0.9872 1 0.9679 0.9679 0.2955 0.3033 0 0.7434 0.00E+00 0.7414 0.00E+00
17 0.902661135 -0.147743602 18631 789 989 20382 616 825 156 1053 0 1.108 1.098 1.105 0.9951 1.112 1 1 0.9808 0.9872 0.2737 0.2815 0 0.9015 0.00E+00 0.9012 0.00E+00
18 0.817550347 -0.290620516 17180 820 1060 20657 646 884 156 1092 0 1.223 1.215 1.214 0.9938 1.223 1 1 0.9808 0.9936 0.2543 0.2651 0 0.848 0.00E+00 0.869 0.00E+00
19 1.156428571 0.209676158 18581 772 1110 15994 594 887 156 1091 0 0.8647 0.8895 0.8413 0.9663 0.8665 1 1 0.9231 0.9551 0.2165 0.2189 0 0.8645 0.00E+00 0.8599 0.00E+00
20 1.171789357 0.228713251 17664 775 1470 15001 588 1115 156 1057 0 0.8534 0.8585 0.8343 0.9656 0.8595 0.9936 1 0.9295 0.9487 0.2141 0.2244 0 0.8604 0.00E+00 0.8471 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2746 Kbytes.




Supplementary data files not provided
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