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Sample GSM8802 Query DataSets for GSM8802
Status Public on Aug 04, 2003
Title CA bz2-Cy3-LE bz2-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf bz2 under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf bz2 under LE plastic-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 1.102205906 0.140393763 34378 451 1431 31241 460 983 156 1268 0 0.9073 0.9011 0.6582 0.7644 0.8226 0.9808 1 0.9679 0.9936 0.2307 0.253 0 0.8958 0.00E+00 0.9036 0.00E+00
2 0.900645739 -0.150968349 28647 473 1907 31772 490 1499 156 1039 0 1.11 1.082 0.766 0.7525 1.024 1 1 1 1 0.1915 0.207 0 0.8813 0.00E+00 0.9227 0.00E+00
3 1.033897737 0.048093495 31280 444 1360 30309 484 1139 156 1164 0 0.9672 0.8883 0.6993 0.8043 0.8407 0.9744 1 0.9295 0.9936 0.2229 0.2265 0 0.7859 0.00E+00 0.8997 0.00E+00
4 0.6868103 -0.54201642 1724 417 880 2343 440 803 156 1153 0 1.456 1.029 0.647 0.6189 1.074 0.7308 0.8013 0.5577 0.6346 0.2606 0.2522 0 0.3398 1.63E-14 0.5042 1.92E-31
5 0.797392177 -0.326638644 1989 399 650 2403 409 539 156 1120 0 1.254 1.153 0.7778 0.7688 1.015 0.7949 0.8462 0.5513 0.6154 0.2332 0.2294 0 0.379 6.90E-18 0.496 2.48E-30
6 0.837410805 -0.255992561 2030 387 641 2356 394 500 156 1133 0 1.194 1.059 0.7429 0.7481 0.9906 0.7756 0.8205 0.609 0.609 0.2315 0.2263 0 0.4168 1.40E-21 0.5114 2.91E-32
7 0.947572816 -0.077691285 1368 392 595 1407 377 434 156 1141 0 1.055 0.7191 0.5573 0.6998 0.7244 0.6538 0.7821 0.4615 0.4359 0.2352 0.2052 0 0.2741 1.40E-09 0.3769 9.76E-18
8 1.317094774 0.397359161 1866 379 495 1499 370 402 156 1061 0 0.7592 0.6403 0.5498 0.7956 0.6321 0.7051 0.75 0.5064 0.5321 0.2748 0.24 0 0.3309 1.19E-13 0.4444 2.82E-24
9 1.488562092 0.573919401 2182 360 436 1598 374 402 156 1049 0 0.6718 0.7709 0.4349 0.644 0.554 0.7756 0.7628 0.5641 0.4872 0.258 0.2642 0 0.3968 2.07E-19 0.4278 1.71E-22
10 0.592494836 -0.755125515 5544 381 617 9100 386 771 156 1104 0 1.688 1.882 1.335 0.7715 1.995 0.9551 0.9679 0.8846 0.9038 0.2005 0.2412 0 0.7861 0.00E+00 0.7444 0.00E+00
11 0.557839173 -0.842078846 5378 411 702 9302 398 918 156 1114 0 1.793 1.816 1.341 0.7852 1.943 0.9872 0.9872 0.9679 0.9744 0.1962 0.2403 0 0.8249 0.00E+00 0.786 0.00E+00
12 0.538634574 -0.892621257 5208 419 1413 9279 388 845 156 1082 0 1.857 1.912 0.3805 0.4027 0.869 0.9744 0.9936 0.9295 0.9679 0.203 0.2327 0 0.7723 0.00E+00 0.7953 0.00E+00
13 0.744621176 -0.425421449 39969 411 2196 53496 371 986 156 1131 0 1.343 1.256 0.9699 0.812 1.244 0.9808 0.9872 0.9615 0.9615 0.2396 0.2363 0 0.8541 0.00E+00 0.9262 0.00E+00
14 0.70649983 -0.501238881 35855 453 1901 50490 381 952 156 1127 0 1.415 1.339 1.001 0.8021 1.316 1 1 1 1 0.2505 0.2667 0 0.8505 0.00E+00 0.9157 0.00E+00
15 0.784129847 -0.35083552 39578 446 1208 50309 404 859 156 1126 0 1.275 1.253 0.9565 0.8004 1.249 1 1 0.9872 1 0.2446 0.2664 0 0.8513 0.00E+00 0.9209 0.00E+00
16 0.389102158 -1.361779113 10862 422 856 27275 444 1015 156 1176 0 2.57 2.529 1.811 0.7573 2.945 0.9808 1 0.9359 1 0.2278 0.3001 0 0.7842 0.00E+00 0.8876 0.00E+00
17 0.381153807 -1.391554809 7943 464 1153 20159 537 1442 156 1135 0 2.624 2.535 1.781 0.7299 3.103 0.9423 0.9936 0.8397 0.9615 0.2723 0.3588 0 0.6052 5.61E-45 0.734 0.00E+00
18 0.367985081 -1.442280817 8943 458 1489 23524 466 1673 156 1099 0 2.718 2.6 1.778 0.7415 3.004 0.9615 1 0.8974 0.9936 0.2503 0.2941 0 0.6887 0.00E+00 0.8028 0.00E+00
19 0.974066622 -0.037907645 9130 416 1196 9331 385 1123 156 1083 0 1.027 0.9788 0.7282 0.781 0.9142 0.9038 0.9679 0.8654 0.9103 0.2309 0.197 0 0.7226 0.00E+00 0.7935 0.00E+00
20 1.079548438 0.110427977 8595 371 835 7978 360 632 156 1118 0 0.9263 0.9021 0.6664 0.7835 0.8138 0.9615 1 0.9167 0.9679 0.2131 0.2025 0 0.7955 0.00E+00 0.8945 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2741 Kbytes.




Supplementary data files not provided
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