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Sample GSM8803 Query DataSets for GSM8803
Status Public on Aug 04, 2003
Title CA mutator-Cy3-LE mutator-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf mutator under CA plastic-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf mutator under LE plastic-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.750166066 -0.41471809 21710 253 431 28931 328 1942 156 1283 0 1.333 1.365 1.057 0.6808 1.869 1 0.9936 0.9936 0.9423 0.2514 0.2338 0 0.9468 0.00E+00 0.8037 0.00E+00
2 0.793790351 -0.333170069 24742 275 642 31143 320 2693 156 1116 0 1.26 1.443 1.031 0.656 1.94 1 1 0.9936 0.9487 0.2159 0.241 0 0.9506 0.00E+00 0.7794 0.00E+00
3 0.944104675 -0.082981271 32378 269 468 34284 274 1815 156 1034 0 1.059 1.298 0.9243 0.6825 1.548 1 0.9551 1 0.8846 0.2506 0.2762 0 0.9578 0.00E+00 0.7302 0.00E+00
4 0.532118737 -0.91017989 3620 232 257 6602 235 331 156 1036 0 1.879 1.855 0.9898 0.5295 2.868 0.8718 0.9167 0.7756 0.7949 0.3665 0.3258 0 0.6528 0.00E+00 0.709 0.00E+00
5 0.524802301 -0.930154051 3866 216 261 7202 247 294 156 1103 0 1.905 2.064 1.207 0.6275 2.618 0.9103 0.9295 0.7372 0.8397 0.3085 0.282 0 0.6414 0.00E+00 0.7532 0.00E+00
6 0.452495531 -1.14402455 3534 243 942 7564 291 1124 156 1058 0 2.21 2.368 0.6023 0.3768 2.924 0.8397 0.8718 0.6538 0.8077 0.3371 0.3368 0 0.5213 3.14E-33 0.6927 0.00E+00
7 2.940841866 1.55622921 2847 262 918 1191 312 1104 156 1128 0 0.34 0.3311 0.2727 0.3085 0.6767 0.7756 0.7179 0.5577 0.4359 0.2904 0.203 0 0.4049 2.26E-20 0.3075 6.25E-12
8 2.797959184 1.484374917 3000 258 308 1284 304 342 156 1131 0 0.3574 0.3496 0.1748 0.4874 0.1932 0.7885 0.7628 0.5385 0.4551 0.325 0.2477 0 0.4624 1.87E-26 0.3658 1.03E-16
9 3.180275716 1.669151846 3258 259 292 1243 300 407 156 1109 0 0.3144 0.4733 0.1433 0.3944 0.1608 0.8141 0.7436 0.5769 0.5 0.3004 0.2401 0 0.4931 6.01E-30 0.4199 7.72E-22
10 0.48119732 -1.055299487 4713 260 408 9566 312 593 156 1108 0 2.078 2.133 1.336 0.6695 2.614 0.9359 0.9808 0.8462 0.9551 0.2297 0.1826 0 0.7309 0.00E+00 0.8456 0.00E+00
11 0.446998021 -1.161659652 4323 258 529 9404 310 766 156 1111 0 2.237 2.254 1.347 0.663 2.693 0.9679 0.9808 0.891 0.9231 0.2392 0.1943 0 0.7127 0.00E+00 0.7751 0.00E+00
12 0.435124509 -1.200499815 4246 262 661 9464 308 1288 156 1149 0 2.298 2.256 1.261 0.5798 3.263 0.9615 0.9808 0.8782 0.9551 0.2494 0.1934 0 0.6763 0.00E+00 0.7512 0.00E+00
13 0.81368373 -0.297459951 21664 269 908 26603 309 1821 156 1186 0 1.229 1.276 0.8514 0.6729 1.413 0.9936 1 0.9615 0.9872 0.2519 0.2053 0 0.7929 0.00E+00 0.8167 0.00E+00
14 0.915933413 -0.126685375 23374 265 790 25543 313 1779 156 1144 0 1.092 1.206 0.8467 0.6692 1.416 1 0.9679 1 0.9231 0.2769 0.2361 0 0.8896 0.00E+00 0.7707 0.00E+00
15 0.885289558 -0.175778689 22556 283 579 25493 334 1178 156 1146 0 1.13 1.231 0.8277 0.6514 1.438 0.9936 1 0.9872 0.9872 0.2747 0.2312 0 0.8817 0.00E+00 0.782 0.00E+00
16 0.432063362 -1.210685196 6636 308 737 14995 349 829 156 1117 0 2.314 2.164 1.246 0.5734 3.291 0.9808 0.9679 0.9231 0.9103 0.2286 0.2472 0 0.596 1.35E-43 0.6723 0.00E+00
17 0.45659424 -1.131015437 4807 289 756 10232 337 916 156 1205 0 2.19 2.186 1.135 0.5512 3.171 0.7628 0.9359 0.609 0.8013 0.2822 0.336 0 0.4325 2.30E-23 0.5911 2.85E-43
18 0.4 -1.321928095 356 326 1192 533 458 2389 156 1175 0 2.5 0.6705 0.8832 0.4353 3.793 0.4295 0.3846 0.141 0.1667 0.1471 0.2129 1 0.1706 5.55E-04 0.2077 1.06E-05
19 0.590440093 -0.760137407 5983 375 1737 10098 600 3421 156 1162 0 1.694 1.838 1.088 0.6064 2.449 0.9679 0.9423 0.9167 0.9103 0.214 0.1959 0 0.6996 0.00E+00 0.6222 0.00E+00
20 0.564705882 -0.824428435 5972 308 1080 10465 435 1943 156 1144 0 1.771 1.946 1.234 0.645 2.549 0.9936 0.9872 0.9872 0.9679 0.1811 0.1779 0 0.8395 0.00E+00 0.7512 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2733 Kbytes.




Supplementary data files not provided
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