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Sample GSM8804 Query DataSets for GSM8804
Status Public on Aug 04, 2003
Title CAb,pl-Cy3-CAB,PL-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl under CA-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf B,Pl under CA-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 01, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.777131373 -0.36376959 7566 219 788 9720 266 894 156 1265 0 1.287 1.215 1.115 0.8823 1.303 1 1 0.9936 1 0.255 0.225 0 0.8065 0.00E+00 0.8692 0.00E+00
2 0.774495597 -0.368671058 7126 178 714 9180 209 824 156 1111 0 1.291 1.294 1.166 0.8873 1.359 1 1 0.9936 0.9936 0.2566 0.2498 0 0.8165 0.00E+00 0.8391 0.00E+00
3 0.783992724 -0.35108783 8754 134 375 11156 161 445 156 1111 0 1.276 1.267 1.148 0.8895 1.331 1 1 1 1 0.2527 0.2449 0 0.9094 0.00E+00 0.911 0.00E+00
4 1.140510949 0.189680297 748 123 137 694 146 178 156 1119 0 0.8768 0.8785 0.8185 0.8335 0.9784 0.9679 0.9359 0.8333 0.7885 0.2762 0.2429 0 0.7772 0.00E+00 0.7311 0.00E+00
5 1.114235501 0.156054188 768 134 152 729 160 169 156 1134 0 0.8975 0.8859 0.8012 0.886 0.8927 0.9423 0.9038 0.7756 0.7756 0.2765 0.2683 0 0.6771 0.00E+00 0.7156 0.00E+00
6 1.151624549 0.203670448 806 168 189 747 193 206 156 1141 0 0.8683 0.8908 0.7852 0.8921 0.8668 0.9167 0.8654 0.8141 0.7885 0.254 0.2218 0 0.7131 0.00E+00 0.7426 0.00E+00
7 0.75 -0.415037499 955 187 210 1243 219 236 156 1141 0 1.333 1.312 1.17 0.8878 1.363 0.8782 0.9231 0.7628 0.7692 0.2862 0.2721 0 0.6631 0.00E+00 0.6831 0.00E+00
8 0.738396624 -0.437532137 882 182 207 1163 215 241 156 1111 0 1.354 1.415 1.108 0.8371 1.396 0.9295 0.9679 0.7821 0.7885 0.2818 0.2961 0 0.6584 0.00E+00 0.6986 0.00E+00
9 0.797018349 -0.327315157 889 194 249 1094 222 271 156 1111 0 1.255 1.34 0.9683 0.8044 1.258 0.9103 0.8974 0.7885 0.7949 0.2784 0.2918 0 0.6106 1.40E-45 0.6498 0.00E+00
10 1.321342926 0.402004935 1296 194 261 1046 212 265 156 1119 0 0.7568 0.7737 0.6691 0.8776 0.7349 0.9936 1 0.9679 0.9936 0.1797 0.1506 0 0.8822 0.00E+00 0.861 0.00E+00
11 1.25 0.321928095 1405 145 229 1175 167 227 156 1134 0 0.8 0.7731 0.7031 0.9015 0.7595 0.9744 1 0.9551 0.9936 0.2021 0.1726 0 0.8581 0.00E+00 0.8758 0.00E+00
12 1.339712919 0.421923885 1645 245 652 1314 269 725 156 1113 0 0.7464 0.7727 0.7626 0.7467 1.029 0.9679 0.9487 0.9359 0.9103 0.1535 0.1469 0 0.7382 0.00E+00 0.6113 1.40E-45
13 0.66779077 -0.582531942 18974 756 1197 28226 945 1404 156 1113 0 1.497 1.473 1.361 0.9109 1.551 1 1 1 1 0.2106 0.2126 0 0.9215 0.00E+00 0.9476 0.00E+00
14 0.661249549 -0.596733263 19238 928 1410 28880 1190 1677 156 1111 0 1.512 1.505 1.353 0.9133 1.535 0.9872 0.9936 0.9808 0.9936 0.2083 0.2059 0 0.911 0.00E+00 0.9709 0.00E+00
15 0.669973592 -0.577823864 19166 392 911 28413 391 1062 156 1139 0 1.493 1.491 1.353 0.931 1.493 0.9872 1 0.9872 0.9936 0.2288 0.2231 0 0.9282 0.00E+00 0.9592 0.00E+00
16 1.119047619 0.162271429 2964 285 398 2682 288 409 156 1147 0 0.8936 0.9144 0.8558 0.9407 0.9044 0.9936 1 0.9679 0.9936 0.2287 0.2259 0 0.8369 0.00E+00 0.8676 0.00E+00
17 1.118651489 0.16176064 2847 292 381 2570 286 358 156 1134 0 0.8939 0.8772 0.8266 0.9454 0.8677 0.9551 0.9679 0.9038 0.9359 0.2385 0.2345 0 0.802 0.00E+00 0.8555 0.00E+00
18 1.127709894 0.173395978 3134 273 538 2799 262 428 156 1141 0 0.8868 0.8949 0.7618 0.9124 0.8208 0.9936 1 0.9679 1 0.2136 0.2021 0 0.8573 0.00E+00 0.8616 0.00E+00
19 1.305017255 0.384068882 5138 222 526 3990 223 390 156 1141 0 0.7663 0.7793 0.6259 0.8608 0.692 0.9872 0.9551 0.9551 0.9487 0.2327 0.1999 0 0.8536 0.00E+00 0.8703 0.00E+00
20 1.332993371 0.414669606 5438 210 454 4132 210 323 156 1102 0 0.7502 0.718 0.598 0.8739 0.6498 0.9487 0.9679 0.9359 0.9615 0.2305 0.204 0 0.8504 0.00E+00 0.9334 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2717 Kbytes.




Supplementary data files not provided
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