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Sample GSM8808 Query DataSets for GSM8808
Status Public on Aug 04, 2003
Title CAb,pl-Cy5-PEB,Pl-Cy3
Sample type RNA
 
Channel 1
Source name corn adult leaf B,Pl under PE-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf b,pl under CA-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 02, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 1.078615794 0.109181064 5802 167 238 6214 136 203 156 1183 0 1.079 1.09 1.023 0.9405 1.093 0.9679 0.9936 0.9423 0.9679 0.28 0.294 0 0.8789 0.00E+00 0.9174 0.00E+00
2 1.077121296 0.107180722 5606 173 229 5995 143 214 156 1111 0 1.077 1.081 1.015 0.9648 1.054 0.9679 0.9936 0.9359 0.9679 0.2945 0.2864 0 0.8737 0.00E+00 0.8818 0.00E+00
3 1.058834277 0.082476805 5642 169 191 5938 143 178 156 1111 0 1.059 1.065 1.012 0.9554 1.062 0.9872 1 0.9744 0.9744 0.3179 0.3077 0 0.9354 0.00E+00 0.9174 0.00E+00
4 1.042944785 0.060662782 328 165 173 309 139 153 156 1120 0 1.043 1.097 0.9151 0.8 1.183 0.9231 0.9103 0.5577 0.6538 0.1336 0.1512 0 0.5736 1.98E-40 0.6032 1.12E-44
5 0.971830986 -0.041222663 374 161 169 344 137 142 156 1133 0 0.9718 1 0.8351 0.857 0.9702 0.9295 0.9103 0.6538 0.6731 0.1602 0.1858 0 0.6616 0.00E+00 0.617 0.00E+00
6 1.025157233 0.035845199 321 162 168 297 134 139 156 1141 0 1.025 1 0.7989 0.8366 0.9464 0.8526 0.859 0.5705 0.6474 0.146 0.1539 0 0.5367 1.58E-35 0.6043 7.01E-45
7 1.42962963 0.51564144 299 164 167 328 135 138 156 1141 0 1.43 1.376 1.059 0.7966 1.426 0.7885 0.8013 0.4231 0.5192 0.1684 0.2015 0 0.4281 9.36E-23 0.5052 1.58E-31
8 1.324503311 0.40545145 317 166 169 338 138 141 156 1141 0 1.325 1.215 1.223 0.9086 1.386 0.8013 0.8205 0.4615 0.5192 0.1605 0.1801 0 0.4529 2.03E-25 0.495 2.75E-30
9 1.231372549 0.300267312 425 170 178 460 146 154 156 1111 0 1.231 1.217 1.065 0.9234 1.167 0.8077 0.8782 0.4359 0.5769 0.2076 0.2396 0 0.4407 5.20E-24 0.5418 4.44E-36
10 1.149707602 0.201266997 1030 175 193 1135 152 183 156 1111 0 1.15 1.096 1.009 0.9218 1.102 0.9808 0.9679 0.9231 0.9487 0.1753 0.1914 0 0.8591 0.00E+00 0.8601 0.00E+00
11 1.125144844 0.170110736 1038 175 205 1119 148 205 156 1111 0 1.125 1.109 1.003 0.9091 1.115 0.9679 0.9744 0.9103 0.9487 0.2067 0.2159 0 0.79 0.00E+00 0.808 0.00E+00
12 1.135231317 0.182986294 1018 175 355 1110 153 288 156 1111 0 1.135 1.117 0.6884 0.8987 0.744 0.9872 0.9744 0.8974 0.9231 0.2137 0.2086 0 0.7758 0.00E+00 0.7871 0.00E+00
13 0.953082106 -0.06932759 12206 185 538 11628 171 450 156 1119 0 0.9531 0.9492 0.8648 0.9658 0.8919 0.9872 0.9808 0.9231 0.9295 0.2461 0.2386 0 0.8563 0.00E+00 0.8601 0.00E+00
14 0.935759798 -0.095789847 11653 196 711 10905 184 630 156 1134 0 0.9358 0.9602 0.851 0.9631 0.8794 0.9808 0.9872 0.9295 0.9679 0.288 0.2758 0 0.8378 0.00E+00 0.8614 0.00E+00
15 0.892899308 -0.163430602 12060 202 565 10779 191 520 156 1141 0 0.8929 0.8692 0.8382 0.9668 0.8628 0.9615 0.9679 0.8718 0.8846 0.2473 0.2507 0 0.8087 0.00E+00 0.8029 0.00E+00
16 1.021013597 0.030002079 1020 211 272 1024 198 292 156 1141 0 1.021 1.009 0.9998 0.9024 1.12 0.9936 0.9872 0.9423 0.9808 0.1524 0.1681 0 0.8567 0.00E+00 0.8771 0.00E+00
17 1.01754386 0.025090981 953 212 238 962 208 243 156 1141 0 1.018 0.994 0.9133 0.8982 1.019 0.9679 0.9423 0.9103 0.9103 0.1673 0.1812 0 0.8224 0.00E+00 0.8064 0.00E+00
18 1.040871935 0.057792575 948 214 276 983 219 285 156 1141 0 1.041 0.9968 0.9318 0.9001 1.039 0.9615 0.9615 0.9167 0.9231 0.1744 0.1686 0 0.789 0.00E+00 0.77 0.00E+00
19 1.127774042 0.173478042 1704 217 285 1899 222 310 156 1111 0 1.128 1.129 0.9855 0.9351 1.058 0.9744 0.9872 0.9231 0.9487 0.1889 0.1778 0 0.7958 0.00E+00 0.8509 0.00E+00
20 1.160475483 0.214716044 1560 214 256 1778 216 286 156 1111 0 1.16 1.189 1.024 0.9256 1.115 0.9808 0.9936 0.9295 0.9808 0.2239 0.2063 0 0.839 0.00E+00 0.8778 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2726 Kbytes.




Supplementary data files not provided
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